| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1088 |
|---|
| Symbol | |
|---|
| ID | 5612422 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | - |
|---|
| Start bp | 1290554 |
|---|
| End bp | 1291840 |
|---|
| Gene Length | 1287 bp |
|---|
| Protein Length | 428 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 640931937 |
|---|
| Product | glutamate-1-semialdehyde aminotransferase |
|---|
| Protein accession | YP_001472827 |
|---|
| Protein GI | 157374227 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0001] Glutamate-1-semialdehyde aminotransferase |
|---|
| TIGRFAM ID | [TIGR00713] glutamate-1-semialdehyde-2,1-aminomutase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.80886 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.019309 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTCGTT CTGACGAACT ATTTGAACAG GCTAAGAAAA CCATCCCAGG CGGGGTTAAC
TCTCCGGTAC GTGCATTCAA CGGCGTTGGT GGCTCACCAC GTTTCATCGA AAAAGCCGAT
GGCGCATATA TCTATGATGC CGATGGTAAA GCCTATATCG ATTATGTTGG CTCTTGGGGC
CCTATGATCT TAGGTCATAA CCACCCTAAA ATTCGTGAAG CTGTATTGGC TGCTGTTGAA
AACGGCCTTT CATTTGGTGC ACCGACTGAA CTTGAAGTCA CCATGGCAGA GAAAGTCATC
GAGATGGTTC CTTCGATGGA ACAGGTTCGT ATGGTGAGCT CAGGTACTGA AGCGACCATG
AGTGCGATTC GTCTGGCACG TGGTTTCACT AGCCGTGACA AGATCCTGAA ATTTGAAGGC
TGCTACCACG GCCACGCTGA CTGCCTACTG GTTAAAGCCG GTTCTGGTGC ACTAACTTTA
GGTCAGCCAA GCTCTCCAGG TATTCCGGAA GATTTTGCTA AGCACACGCT AACTGCAACT
TATAACGACC TAGAGTCTGT TAAGGCGCTG TTCGAGCAGT ACCCTGAAGA GATCTCTTGT
ATCATTCTTG AGCCGGTTGC CGGCAACATG AACTGTATTC CACCGGTAGA AGGTTTCTTA
CAAGGCCTTC GTGCTATCTG TGATCAGTAC GGCGCATTGA TGATTATCGA TGAAGTGATG
ACAGGCTTCC GCGTATCTAA GAGCGGCGCT CAAGGTCACT ACGGCGTGAC TCCTGACTTG
ACTACACTTG GTAAGGTCAT CGGTGGCGGT ATGCCAGTGG GCGCATTTGG TGGTCGTAAA
GATGTGATGC AGTTTATCGC ACCAACAGGT CCTGTATACC AGGCTGGTAC GCTATCTGGT
AACCCAATCG CCATGTCGGC AGGTCTTGCC CAGATGGACG CCCTGTGTGA AGAAGGCGTT
TACGAAGAGT TAGCGGCAAA GACTAAGCGG ATCGCAGAAG GCTTTAAAGC TGCGGCTAAT
AAGCACGGCA TCCCGATGTC AATCAACTAC GTTGGCGGTA TGTTCGGACT CTTCTTCACC
GAAGAGGAAA AAGTCACGTC GTTTGAGCAA GTCACTAAAT GTGATGCAGA CAAGTTCCCT
GAGTTCTATC ACGGCATGTT AGATGAAGGT GTATACCTTG CTCCTAGCGC CTATGAAGCA
GGCTTCCTGT CTATGGCCCA TGGTGAAAAA GAACTTGAAG AAACATTAGC AGCAGCCGAC
CGCGTGTTTG CTAAGATGGC TAAGTAA
|
|---|
| Protein sequence | MTRSDELFEQ AKKTIPGGVN SPVRAFNGVG GSPRFIEKAD GAYIYDADGK AYIDYVGSWG
PMILGHNHPK IREAVLAAVE NGLSFGAPTE LEVTMAEKVI EMVPSMEQVR MVSSGTEATM
SAIRLARGFT SRDKILKFEG CYHGHADCLL VKAGSGALTL GQPSSPGIPE DFAKHTLTAT
YNDLESVKAL FEQYPEEISC IILEPVAGNM NCIPPVEGFL QGLRAICDQY GALMIIDEVM
TGFRVSKSGA QGHYGVTPDL TTLGKVIGGG MPVGAFGGRK DVMQFIAPTG PVYQAGTLSG
NPIAMSAGLA QMDALCEEGV YEELAAKTKR IAEGFKAAAN KHGIPMSINY VGGMFGLFFT
EEEKVTSFEQ VTKCDADKFP EFYHGMLDEG VYLAPSAYEA GFLSMAHGEK ELEETLAAAD
RVFAKMAK
|
|---|
| |