| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1087 |
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| Symbol | |
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| ID | 5612421 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 1288749 |
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| End bp | 1289996 |
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| Gene Length | 1248 bp |
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| Protein Length | 415 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640931936 |
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| Product | citrate transporter |
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| Protein accession | YP_001472826 |
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| Protein GI | 157374226 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1055] Na+/H+ antiporter NhaD and related arsenite permeases |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.00953258 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCTCTACC TATTCCTGAT ATCTCTCGCC GTTTTAGCCC TGTTAAGTAT CATATTCGAA
GAAGTCACCC ATCTGAATAA AGCCAAGACC ACACTGTTTT TTGGTTGTAT CTCCTGGATT
GTCCTGTTTA TGAGCGCCGG AGATCCCGCT CACGAAAAAA TAGTTGAAGC AGAACTTAAC
GAAAACTTAT TGGAAATCGC CACTCTTTGG TTGTTTCTTA TGTCGACAAT GACGTTCGTT
GCCTATCTCA ATGCTAAAGG CATGATTCAG ATTTTAGTGC AGAAGCTATT CCCCCAGAAA
GTATCGGTAA GAATACTGAT GCTGCAGGTG GCACTCTTCT CTCTGGTTTT ATCAGCCATT
TGTGACAACG TCACCGCCAC ACTGGTATCA CTGGGTCTGC TAACCACATT CAAACTCGAT
AGTCAGATAC GTCGACGTAT GGCGGTGCTG ATTATTTTTG CGGTTAACTC CGGCGGAGTG
GCGTTAATTA CCGGTGACGT CACCACCTTG ATGATCTTCC TCGGCGGACA TGTTCAGATG
TCTGAGCTTC TGCTGTTATT TGTCCCGGCT GCCGTCAGTG TAATGTTACT TGCCGTGCTA
TTTTCATTGA AAGCCGAAGG CCATGTCAGT ACGACACCGA TAAAGCGGGA GTATCAGAGG
GTCGATGTGG TGATAGCGGT AATCTTTTTC TCAACCATTG TTGCGACCAT GGCATTAAAC
GTACTCTTTA GTATTCCCCC GGTGCTGACA TTTTTGACGG GCCTCTCTGT GATGTTCCTC
GTCGGCCACA GCTCCCGAAG CAATAAAGAG GAGTTACAGA TCCTCGAATA CATACGTCAG
GTGGAATACG ACACCCTGCT CTTCTTCCTG GGAATACTCC TGTTGGTCGG CATGCTGAAA
GAGATTGGAA CCTTAGACCT ACTGACTCAG GTCTATGCCC AGTTCGACCC TAACATTTCA
AACTTTGTTA CCGGTATTGG CTCGGCGCTG CTCGATAACG TGCCTCTGAC CGCAGCACTA
TTAAAGGCAG AGCCAATACT CAATACACCT GAGTGGTTGG GGTTGACCTA TTCGGTTGGC
GTTGGTGGTT CTCTGCTGGT GATAGGTTCG GCGGCGGGGA TTATCGCCAT GAGTAAGGTA
AAGGAGCTGA CTTTTGTCAG CTACCTTAAG TACGTTCCTG CACTATTGCT GTGTTACAGC
TTAGGTTACG GCTTGACCCT GCTGCTGTCG TATAAATTTT ATGGATAG
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| Protein sequence | MLYLFLISLA VLALLSIIFE EVTHLNKAKT TLFFGCISWI VLFMSAGDPA HEKIVEAELN
ENLLEIATLW LFLMSTMTFV AYLNAKGMIQ ILVQKLFPQK VSVRILMLQV ALFSLVLSAI
CDNVTATLVS LGLLTTFKLD SQIRRRMAVL IIFAVNSGGV ALITGDVTTL MIFLGGHVQM
SELLLLFVPA AVSVMLLAVL FSLKAEGHVS TTPIKREYQR VDVVIAVIFF STIVATMALN
VLFSIPPVLT FLTGLSVMFL VGHSSRSNKE ELQILEYIRQ VEYDTLLFFL GILLLVGMLK
EIGTLDLLTQ VYAQFDPNIS NFVTGIGSAL LDNVPLTAAL LKAEPILNTP EWLGLTYSVG
VGGSLLVIGS AAGIIAMSKV KELTFVSYLK YVPALLLCYS LGYGLTLLLS YKFYG
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