| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1081 |
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| Symbol | |
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| ID | 5612901 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1281820 |
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| End bp | 1282716 |
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| Gene Length | 897 bp |
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| Protein Length | 298 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640931930 |
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| Product | rRNA (guanine-N(1)-)-methyltransferase |
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| Protein accession | YP_001472820 |
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| Protein GI | 157374220 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.00250599 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.0321173 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAAGTA TCTATTTATG CCCTGTGTGT GACCAACCTC TGTTAATTCA CGAGGCATCT
CAGGGATTGC ATTGCTGTAA GAAACACCAT TTTGATAAAA GTGAAAATGG ATATTGGATT
TTTAGTCAGG CCAAGAAACC GCAGATCGAC TCCAGACAGA TAATGCGTGC CAAGCGGTTC
CTGCTCGAGT CGGGAATATT TCAGCCGATT GTAGACAAGG TTGAGGCGAT GATCACCGCA
TCAGACCTGA CCGAAGGAGA GGTTAGTTAC CTCGACTACG ATTGTGGTGA AGGTTATTAC
CTGCGTGAGA TTAAAGCTAA GCTTGCTCAG AGTGTCGAAG GCAAAAGTAT TGCCAATAGA
CTGAATACCT ATGGGATCAC AGAAGCTGAG AATGCACTTT TCTCTGCCGC TAAGATTCAG
TCTGAGGCGA AAGCCGAACT CAATGGCGAT GACGATATAG TTGACTGCGA TACAGAGTCG
GATACGACCT TTATCGTCAG TACCTTGAAG AAGCTGCCTC TTGCCAGTGA GAGTTTAGAT
CTCGTGACTC TGATTGATAA GCAGCTCAAA GGTAAAGAGT TGATTAGGGT ATTAAAACCT
GGCGGCCTCT TGATTCAGGT CTCTCCGGCT CCTCGTCATT TATGGCAGAT AAAAGAATAT
ATCTATCCTG ATATGAAGGA GAAAGCGCTT AATACCCCAC AATCGAGTGA ACTGGAACTG
CTGCAAACCG AGCGAGCCAG CTTTAAATTG GCTATCGATG GCAACCAGGC TCTAGCGCTA
TTGGAGATGA CGCCTTATGC GTGGCGAGCC AATGATAAGG TGCGCAAGCA GATAGCGGAT
AACAGATTCG AGGCCTTAGA GATCGACTTT GTTGTCACCC TGTCGAAGAA GAAATAA
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| Protein sequence | MKSIYLCPVC DQPLLIHEAS QGLHCCKKHH FDKSENGYWI FSQAKKPQID SRQIMRAKRF
LLESGIFQPI VDKVEAMITA SDLTEGEVSY LDYDCGEGYY LREIKAKLAQ SVEGKSIANR
LNTYGITEAE NALFSAAKIQ SEAKAELNGD DDIVDCDTES DTTFIVSTLK KLPLASESLD
LVTLIDKQLK GKELIRVLKP GGLLIQVSPA PRHLWQIKEY IYPDMKEKAL NTPQSSELEL
LQTERASFKL AIDGNQALAL LEMTPYAWRA NDKVRKQIAD NRFEALEIDF VVTLSKKK
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