| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1079 |
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| Symbol | |
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| ID | 5612899 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1280365 |
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| End bp | 1280862 |
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| Gene Length | 498 bp |
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| Protein Length | 165 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640931928 |
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| Product | 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase |
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| Protein accession | YP_001472818 |
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| Protein GI | 157374218 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0801] 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase |
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| TIGRFAM ID | [TIGR01498] 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.101128 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.0299065 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCGCGC GAGTCTTTAT CAGTTTAGGA AGTAATATTG AACCTCAGCG TTACCTTAAG
GCTGCCTTAA GTGAGCTTAG CTATCATTTT GGGGCGCTCA CACTCTCATC AGTTTATGAC
AGTGAAGCCG TCGGTTTCGA TGGCAGTAAC TTCTTGAATA TGGTTGTCGC GGTCGATACC
TGTTTGAGTA TTTCTGAGGT CGTTACTCTG TTTAAACGAA TAGAGCGGGA TAATGGTCGT
CTGGTTGGGG CCAAGAAGTT TGCACCCAGG ACATTAGATC TCGATCTGCT TCTTTATGAT
GATGTTGTGA CTCAGGAACC TGTCGAGCTT CCAAGAGCCG AAATCACCAA GAATGCATTT
GTGCTCTGGC CCATGGCTGA GGTTGCCCCG GATCTGTTAC ATCCCCTGTT AGCGCGAAGC
TATCAAGCTT TGTGGGATGA ATATGATAAA ACGGAGCAAA AACTTTGGCC GGTTCCGTTT
GCCTGGGCAC CGTCTTAA
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| Protein sequence | MSARVFISLG SNIEPQRYLK AALSELSYHF GALTLSSVYD SEAVGFDGSN FLNMVVAVDT
CLSISEVVTL FKRIERDNGR LVGAKKFAPR TLDLDLLLYD DVVTQEPVEL PRAEITKNAF
VLWPMAEVAP DLLHPLLARS YQALWDEYDK TEQKLWPVPF AWAPS
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