| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1074 |
|---|
| Symbol | |
|---|
| ID | 5613023 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | - |
|---|
| Start bp | 1276887 |
|---|
| End bp | 1277330 |
|---|
| Gene Length | 444 bp |
|---|
| Protein Length | 147 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 640931923 |
|---|
| Product | GatB/YqeY domain-containing protein |
|---|
| Protein accession | YP_001472813 |
|---|
| Protein GI | 157374213 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG1610] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.0455696 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 0.725316 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCTAG TTGATCAGCT AAAAGACCAA ATGAAAGAAG CCATGCGTGC CAAAGAAAAG
GTGCGCTTGG GGACTATTCG TATGGCACTA GCCGCCGTTA AGCAGATTGA AGTGGATACC
CGCGAAACTC TGACTGACGA CCAAGCTATA GCGGTCTTAA CCAAAATGGT TAAACAGCGT
CGCGATTCGA TTGCACAATA TAGTGCAGCC GGACGTGATG AACTAGCAGC AATTGAAGCA
GCGGAGATTC AAGTTATTGA ACACTTCCTG CCTAAACCTC TTTCCGAAGA GGAAATTGTC
GAGCTAGTTG ATGCAAGCAT TGTTGAAATG GGCGCATCCT CCATGGCGGA TATGGGTAAA
GTAATGGGAG CGTTAAAACC TAAGGTCTTA GGAAGAGCTG ATATGGCGGC AATTGGCGCT
ATGATCAGAG CTAAACTTAA GTAA
|
|---|
| Protein sequence | MSLVDQLKDQ MKEAMRAKEK VRLGTIRMAL AAVKQIEVDT RETLTDDQAI AVLTKMVKQR
RDSIAQYSAA GRDELAAIEA AEIQVIEHFL PKPLSEEEIV ELVDASIVEM GASSMADMGK
VMGALKPKVL GRADMAAIGA MIRAKLK
|
|---|
| |