| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1073 |
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| Symbol | |
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| ID | 5613022 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 1275068 |
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| End bp | 1276789 |
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| Gene Length | 1722 bp |
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| Protein Length | 573 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 640931922 |
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| Product | DNA primase |
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| Protein accession | YP_001472812 |
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| Protein GI | 157374212 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0358] DNA primase (bacterial type) |
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| TIGRFAM ID | [TIGR01391] DNA primase, catalytic core |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.096623 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGATAC CTCGTGATTT TATCAATGAG CTAGTAGCTC GAATCGATAT TGTCGATCTT
ATCGACGCAA AAGTACCCCT GAAAAAGGCG GGTAAGAATC ATTCTGCCTG TTGTCCGTTT
CACAGCGAAA AATCGCCCTC TTTTACCGTT AGTCGAGATA AGCAGTTTTA TCATTGCTTC
GGCTGTGGTG CCCATGGAAA TGTCATCGAC TTTGTCATGG AGTACGACCG ACTCGATTTT
ATCGATGCGA TTGAAGATCT CGCTGGCCAA TTGGGCGTTG AAGTCCCAAG AGAGCAAGGT
ACTGGTCCAA AACGCGATGA AGGTTTAAGT CGCGACCTCT ATCAGTTAAT GGAAGAGGCA
AGCCTCTATT TTCAGAACCA GTTAAGACAA CATAATGACA AACAAAAGGT CCTCGAATAT
CTAACACATC GCGGACTATC CAATGAAGTT GTTGAACACT TCAATATTGG ATTTGCTCCC
GATGGATGGG ATGGTTTATT AAGCCGTTAC CGTCAAAATC AGGATGCACA AGACAAATTA
CTTACTGCCG GAATGGTGAT TGAGAACGAT AATGGCAAAC GTTACGATAG ATTTCGTGAC
AGGCTTATGT TCCCCATTCG TGACAGAAGA GGCCGGGTTA TCGGTTTCGG TGGCCGAGTT
TTAGGCGATG GCACACCAAA GTACTTGAAT TCTCCGGAAA CGCCCATATT TCATAAGGGC
AATGAGCTAT ATGGACTCTA TGAGCTAAAA CAACGCCATA GAGATCCCAA GCAAGTACTC
ATTGTTGAAG GCTATATGGA TGTGGTGGCA CTGGCACAAT TTGGCGTCGA CTATGCGGTT
GCTTCGCTGG GTACCTCAAC CACAGCAGAG CAATTTCAGC TACTACTACG CAGTGCTAAA
GAAGTGATCT GTTGTTATGA CGGAGATAAA GCGGGCGTCG AAGCGGCGTG GCGTGCTCTT
GAAACGGCAT TACCCTTGCT TAAGCCAGGT AATCAAGTCA AATTTATGTT CCTACCTGAA
GGTGAAGACC CGGATACTAT GGTTCGTCAG GTAGGCAAAG AAGTATTCGA AAGTCAGGTT
AATGATGCGC AGGAACTACC CGAGTTTCTT TTTGAAACCT TAGCCAAGCG ATATGGCTCA
GATAAAGGGA CGTTGGCCAA GCAAGCCATT ACTCTGACAG AGAAGATACA AGATACTGTT
CTACAAAGTT TATTGCTCGA AAGCTTAGCC TATAAATTGG GTATGAACAG TGCTGAAGAG
CTAAAGCGGA AACTTGGTTT TTCTTCAAAA GAACAAGTAA AGCCTCTTCA AAAGAAAGCG
TTAAAAGGAC GTGGAACCCC ATTGCGATTA GCCATCGCAT TGCTGGTACA ACATCCTAGT
CTTGGTGAAG GACTGCCAGA GCAACCAGCG CTTAAACACC TAAAGATGGC CGGCATTGAA
CTGCTGATCC TCTTGTTAGA CGAAACTCGT GTGAAAGTGA AACACAGCGC ACAACTACTT
GAACAGTTCA GGGGCGACAA ACAGCTCAGC ACCCTGAAAA AACTGACCCA ATGGGATCAT
CAAGTGGCGG ATGAAAACTT GCAGCAAGAG TTTAGAAAGA CCCTGATTTG GTTGAACAAT
CAATATATTG AACAACGTTA TCAGGAGTTG AGTCTAAAAC AGAACCATAC TAAAGAAGAA
AGGATTCAGC TCACTAAGCT AATCTCAGTC ATAAAAGGCT AA
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| Protein sequence | MAIPRDFINE LVARIDIVDL IDAKVPLKKA GKNHSACCPF HSEKSPSFTV SRDKQFYHCF
GCGAHGNVID FVMEYDRLDF IDAIEDLAGQ LGVEVPREQG TGPKRDEGLS RDLYQLMEEA
SLYFQNQLRQ HNDKQKVLEY LTHRGLSNEV VEHFNIGFAP DGWDGLLSRY RQNQDAQDKL
LTAGMVIEND NGKRYDRFRD RLMFPIRDRR GRVIGFGGRV LGDGTPKYLN SPETPIFHKG
NELYGLYELK QRHRDPKQVL IVEGYMDVVA LAQFGVDYAV ASLGTSTTAE QFQLLLRSAK
EVICCYDGDK AGVEAAWRAL ETALPLLKPG NQVKFMFLPE GEDPDTMVRQ VGKEVFESQV
NDAQELPEFL FETLAKRYGS DKGTLAKQAI TLTEKIQDTV LQSLLLESLA YKLGMNSAEE
LKRKLGFSSK EQVKPLQKKA LKGRGTPLRL AIALLVQHPS LGEGLPEQPA LKHLKMAGIE
LLILLLDETR VKVKHSAQLL EQFRGDKQLS TLKKLTQWDH QVADENLQQE FRKTLIWLNN
QYIEQRYQEL SLKQNHTKEE RIQLTKLISV IKG
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