| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1064 |
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| Symbol | |
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| ID | 5613176 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1260915 |
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| End bp | 1261742 |
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| Gene Length | 828 bp |
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| Protein Length | 275 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640931912 |
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| Product | ornithine carbamoyltransferase |
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| Protein accession | YP_001472803 |
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| Protein GI | 157374203 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1177] ABC-type spermidine/putrescine transport system, permease component II |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 30 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTAGCC TAAAGGATAA GTTAAGTTTT TCTACCATCA TGCTTTGGGC TGGAATGTTC
TTCCTCTACG TTCCTATGTT TATCTTAATC TTCTACTCAT TTAACGAGTC GAAATTGGTG
ACGGTGTGGG GCGGGTTCTC CGCTAAATGG TACGGTGAGC TGTTTCGTGA TCAGCAGATA
TTAGATGCGG TGTGGACCAG TTTACGGGTG GCATTTTTTG CCTCATCGAT GGCTGTGATA
CTCGGGACTA TGGCGGCATT TGTGATGACT CGGTTCTCCC GCTCATGGGG CAAGACGACA
CTGTCGAGCA TGATCACTGC GCCACTGGTT ATGCCTGAGG TGATCACGGG TTTGTCACTG
CTGTTGCTGT TTGTGCATAT GGCCGACACC TTTGGATGGC CAGCCGAACG GGGAATGTTG
ACGGTATGGC TTGCGCATTC GACATTCTGC GCCGCTTACG TAGCCGTGGT GGTCTCGGCG
CGCCTTCGGG AGTTGGATCA ATCCATCGAG GAAGCGGCTC AAGATCTGGG GGCGACCCCG
CTTAAGACGT TTTTCTTTAT CACAGTTCCT ATGATCTCCC CCTCTTTGAT GGCGGGTTGG
TTACTCTCAT TTAGCCTCTC ATTGGATGAC TTAGTGATAG CCAGCTTTAC ATCGGGACCG
GGCGCGACGA CCCTGCCTAT GGTGGTGTTC TCCTCCGTTC GTATGGGGGT TTCACCTAAG
ATTAATGCCT TGGCGACGCT GATTATTTTA ACCGTTTCCC TGATTGCATT TATCTCCTGG
TACTTCGCTC GTCGAAGTGA CAAGAAGAGC CTTCCGCCAG CCATGTAA
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| Protein sequence | MSSLKDKLSF STIMLWAGMF FLYVPMFILI FYSFNESKLV TVWGGFSAKW YGELFRDQQI
LDAVWTSLRV AFFASSMAVI LGTMAAFVMT RFSRSWGKTT LSSMITAPLV MPEVITGLSL
LLLFVHMADT FGWPAERGML TVWLAHSTFC AAYVAVVVSA RLRELDQSIE EAAQDLGATP
LKTFFFITVP MISPSLMAGW LLSFSLSLDD LVIASFTSGP GATTLPMVVF SSVRMGVSPK
INALATLIIL TVSLIAFISW YFARRSDKKS LPPAM
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