| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1062 |
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| Symbol | |
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| ID | 5610134 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1258838 |
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| End bp | 1260001 |
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| Gene Length | 1164 bp |
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| Protein Length | 387 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640931910 |
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| Product | spermidine/putrescine ABC transporter ATPase subunit |
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| Protein accession | YP_001472801 |
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| Protein GI | 157374201 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG3842] ABC-type spermidine/putrescine transport systems, ATPase components |
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| TIGRFAM ID | [TIGR01187] spermidine/putrescine ABC transporter ATP-binding subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGGCGCC TTTTGTGGAG AAGTTATATG GCTAGTACCT CGGGCGTCAC CAATAAACCA
ACAACAAAGA CGCATGGAAA AGTCCTGCTT AAGATTGAGC GGGTCAGTAA ATTATTCGAT
GAAGTTCGCG CCGTCGATGA TGTTTCATTA AGCATCAATC AGGGGGAGAT CTTTGCGTTA
TTAGGCGGTT CAGGTTCCGG TAAGTCGACA CTGCTGCGCA TATTGGCTGG ATTTGAAAAG
CCCTCAGAGG GCCGCATTTA TCTGGACGGT GAAGACATTA CCGATATGCC ACCCCACAAA
CGTCCAATCA ACATGATGTT TCAATCCTAT GCCCTGTTCC CCCATATGTC GGTGGAACAA
AATATCGCAT TTGGTTTGAA GCAGGATAAA TTGCCTAAGG ATGAGATAGC CGCCCGTGTT
AAAGAGATGC TTAAGCTGGT GCATATGGAG CAGTATGCCA AGCGTAAGCC GGCTCAGCTC
TCCGGAGGTC AGCGTCAACG TGTCGCCTTA GCCCGTTCGC TGGCGAAGCG TCCTAAGTTA
CTCTTGCTCG ATGAGCCGAT GGGGGCATTG GATAAGAAGC TGCGAACTCA GATGCAGTTA
GAGGTGGTCG ATATTCTTGA AGAGGTGGGG GTTACCTGTG TGATGGTGAC GCACGATCAA
GAAGAGGCGA TGACCATGGC CGAACGCATT TCTATCATGA ACGAGGGCTG GATAGCCCAA
ACCGGCTCTC CTATGGATAT CTATGAGAGT CCGTCATCTC GAATGGTGGC CGAGTTTATC
GGGTCTGTTA ACCTGTTCGA AGGTGAGATT GTTGTCGATG AAGCGGATCA TGCCATCATC
GAGTCCCCAA GATTGGAACA GCAATTCTAT ATTGGTCACG GCGTATCGAC CAACGTGGAA
GATAAGAAGG TCTGGTTAGC CGTGAGACCC GAAAAAGCCC GCATCAGTCG TGAACAACCG
CAAAATGAAT ATAACTGGTG TCGCGGTGAG GTTGAGGATA TTGCCTACCT TGGCGGCATC
TCTGTCTATT ATATCCGCCT CGCTAACGAT CAGGTTATTC AGTCGGTGAT GACTAACCGG
GATAGACGCT CCGATCCTCC GACATGGAAA GATAAGGTCT TCATCAGTTG GGAGGCCACC
AGCGGTGTGG TCCTCAGATC ATAG
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| Protein sequence | MRRLLWRSYM ASTSGVTNKP TTKTHGKVLL KIERVSKLFD EVRAVDDVSL SINQGEIFAL
LGGSGSGKST LLRILAGFEK PSEGRIYLDG EDITDMPPHK RPINMMFQSY ALFPHMSVEQ
NIAFGLKQDK LPKDEIAARV KEMLKLVHME QYAKRKPAQL SGGQRQRVAL ARSLAKRPKL
LLLDEPMGAL DKKLRTQMQL EVVDILEEVG VTCVMVTHDQ EEAMTMAERI SIMNEGWIAQ
TGSPMDIYES PSSRMVAEFI GSVNLFEGEI VVDEADHAII ESPRLEQQFY IGHGVSTNVE
DKKVWLAVRP EKARISREQP QNEYNWCRGE VEDIAYLGGI SVYYIRLAND QVIQSVMTNR
DRRSDPPTWK DKVFISWEAT SGVVLRS
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