| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1061 |
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| Symbol | |
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| ID | 5610133 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1257662 |
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| End bp | 1258762 |
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| Gene Length | 1101 bp |
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| Protein Length | 366 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640931909 |
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| Product | extracellular solute-binding protein |
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| Protein accession | YP_001472800 |
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| Protein GI | 157374200 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0687] Spermidine/putrescine-binding periplasmic protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGCTTT TAAAGAAGAT GACGACAATA GCACTATTGG GTGCGGGTGT GTTGGCAAGC
ACTAATCTAA TGGCACAAGA GGAGGTTCGG GTCTATAACT GGTCCGATTA TATCGCCGAA
GATACGTTGG CTAATTTTGA AAAAGAGACC GGCATTCGTG TGGTTTATGA TGTGTTTGAC
AGTAATGAGG TCGTGGAAGC TAAGTTACTT TCTGGCCGCT CCGGCTATGA TATTGTCGTC
CCCTCTAATA GCTTCCTGGC TAAGCAAATT AAAGCCGGCG CATTTCAGAA GCTGGACTCA
AACCTTCTGC CTAACCATAA AAACCTGAAT TCAGATCTGA TGACTCAGCT TCAAACTGCC
GATCCGGGTA ACCAATATGC CGTTCCTTAT CTTTGGGGAA CAAATGGTAT CGGTTATAAC
GAGGCGAAAG TGAAAGAGGT GTTGGGTGAA GATGCACCTG TCGACTCTTT AGAGCTTATC
TTTAACCCTA AGTATGCTTC AAAGCTCTCT AAGTGTGGTC TGTCGTTCCT CGATTCTGCC
GATGAGATGG TACCGATGGC GCTTATCTAT CTGGGCCTGG ATCCTAACAG CAGCAAGAAG
GATGATTTTA AGCGTGCGGG TGAAGTGTTA GAAGCCATTC GTCCACATAT CACCTATTTC
CACTCATCGC GTTACATCAC AGATCTTGCC AATGGCGATC TCTGTGTAGC AGTAGGTTAT
TCAGGCGATA TCTTGCAGGC TGCAACCCGT GCAGAAGAAG CTGAAAACGG CCATGTTATC
GGTTACTCGA TACCAAAAGA GGGCGCAAAT CTCTGGTTTG ATATGTTGGC CATTCCCGCC
GATGCCGCTA ACGTGAGCAA TGCTCATACC TTTATCAACT ATCTGCTTCG TCCTGAGGTG
ATAGCCCCTA TCTCGAACTA TGTCTCTTAT GCCAATCCTA ATGCTGCGGC TCAAGACTTG
GTCGATGACG AGATCCGTAA CGACCCGGGT ATCTATCCGA CTGATGAGGT ATTGAAGCGT
CTTTATGTGG GTGAGGTTCG TGCCTTAAAG GCACAAAGAG CACTGACCCG AGTCTGGACT
AAGGTCAAAT CAGGTTACTA A
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| Protein sequence | MKLLKKMTTI ALLGAGVLAS TNLMAQEEVR VYNWSDYIAE DTLANFEKET GIRVVYDVFD
SNEVVEAKLL SGRSGYDIVV PSNSFLAKQI KAGAFQKLDS NLLPNHKNLN SDLMTQLQTA
DPGNQYAVPY LWGTNGIGYN EAKVKEVLGE DAPVDSLELI FNPKYASKLS KCGLSFLDSA
DEMVPMALIY LGLDPNSSKK DDFKRAGEVL EAIRPHITYF HSSRYITDLA NGDLCVAVGY
SGDILQAATR AEEAENGHVI GYSIPKEGAN LWFDMLAIPA DAANVSNAHT FINYLLRPEV
IAPISNYVSY ANPNAAAQDL VDDEIRNDPG IYPTDEVLKR LYVGEVRALK AQRALTRVWT
KVKSGY
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