| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1058 |
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| Symbol | |
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| ID | 5612945 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1253857 |
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| End bp | 1254411 |
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| Gene Length | 555 bp |
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| Protein Length | 184 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640931906 |
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| Product | XRE family transcriptional regulator |
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| Protein accession | YP_001472797 |
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| Protein GI | 157374197 |
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| COG category | [K] Transcription |
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| COG ID | [COG3620] Predicted transcriptional regulator with C-terminal CBS domains |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCATTTGG ATATTGGAAC TAGCCTTAAG GCTGTCCGTA AACTAAAAGG CCTTTCGCAA
CGAGAACTTG CGAAAAGAGC CGGAGTGACC AATAGCACTA TCTCTATGAT TGAGAAGAAC
AGTGTGAGCC CGTCGGTAAG CTCCTTGAAA AAAGTGTTAT CGGGGCTGCC TATGTCCCTG
GTGGACTTTT TTTCTATGGA AGATAGCGGT GGCAGCGAGC AAAAAGTGGT GTATCGCAGC
GACGAACTTC TCGATATCGG TGATGGCAAT TTAGATTATA AGCTGGTGGG CAGAGATTAC
CCTAACAGGG CGATGTCTGT AATGAGCGAG ACCTATCCAC CAGGCTCCGA TACCGGTGAA
GAGATGCTCA AACATGAAGG CGAAGAGGCG GCCATGGTTA TCGAAGGTAA GTTTGAGCTG
ACCGTAGGTG AAGAGGTGTT TATTCTCGAA GCCGGAGACA GTTATTACTT TAACAGCGAG
ACCCCTCATA GATTCAGAAA TCCGTTCGAT GAAAACTGCC GTATCGTTAG CGCGACAACG
CCTGCAAACT TTTAA
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| Protein sequence | MHLDIGTSLK AVRKLKGLSQ RELAKRAGVT NSTISMIEKN SVSPSVSSLK KVLSGLPMSL
VDFFSMEDSG GSEQKVVYRS DELLDIGDGN LDYKLVGRDY PNRAMSVMSE TYPPGSDTGE
EMLKHEGEEA AMVIEGKFEL TVGEEVFILE AGDSYYFNSE TPHRFRNPFD ENCRIVSATT
PANF
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