| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1044 |
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| Symbol | |
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| ID | 5610175 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 1238919 |
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| End bp | 1240256 |
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| Gene Length | 1338 bp |
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| Protein Length | 445 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 640931892 |
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| Product | beta alanine--pyruvate transaminase |
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| Protein accession | YP_001472783 |
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| Protein GI | 157374183 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0161] Adenosylmethionine-8-amino-7-oxononanoate aminotransferase |
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| TIGRFAM ID | [TIGR00508] adenosylmethionine-8-amino-7-oxononanoate transaminase |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.00442858 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 0.786011 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGTCAGATA GTCAGGCAAA TATGCAAAGC GAAACGCAAT CTCTTGAACA CTACTGGATG
CCTTTTACGG CAAACAGGCA GTTCAAGTCG AAACCAAGAA TGCTCGCCGA AGCACAAGGC
ATGTATTACA AAGATACCAC TGGCAGACCC GTACTCGATG GCACGGCAGG ACTATGGTGT
TGTAATGCAG GGCATGGACG CAAAGAGATC TCGCAGGCTG TAAGTAAACA GATCCACCAA
ATGGATTACG CTCCCTCTTT CCAGATGGGA CACCCTATTG CCTTCGAACT CGCCGAACGT
CTGGCCCAAA TCAGTCCTGA AGGGTTGAAT AAGGTGTTCT TCACCAACTC TGGTTCAGAG
TCGGTCGATA GCGCCCTGAA AATTGCCATT AATTACCACA GAGCCAGGGG GGAAGCGACA
CGAACGCGTT TCATCGGTCG CGAGCTTGGT TATCACGGTG TCGGCTTCGG TGGAATATCC
GTCGGCGGCA TCGGCGGGAA CCGTAAGACC TTCAGTCAAC AACTATTGCC CGGTGTCGAT
CATCTGCCCC ATACATTAGA TATGCAGGAC AACGCCTTTA GTCGTGGCAT GCCTAAGACC
GGAGCTGAAA AAGCGGATGT GCTGGAGCAG TTGGTTGCAC TTCACGGGGC TGAAAATATC
GCCGCAGTGA TTGTCGAACC TATGTCAGGA TCGGCCGGCG TGATATTACC GCCAGAAGGC
TACCTGCAAA GGCTCAGAGA GATCACCAAG AAGTATGGCA TCTTACTGAT TTTTGATGAG
GTGATCACCG GTTTTGGGCG AGTAGGCGAT GCATTTGCCA GCCAGCGCTG GGGCGTTACG
CCAGACATGA TCACCACTGC CAAGGCGCTC AACAACGGAG CGATCCCCAT GGGCGCCGTA
CTGATCGATG ACGCCATCTA CGATGCCAGT ATGCAAGGCC CGGATGGTAT CGAGCTGTTT
CATGGTTATA CCTATTCAGG CCACCCCGTC GCCGCAGCTG CGGCCATAGC GACTCTGGAT
ATCTACCAAA ACGAGCAACT TTTCGAACGT AGCAGAGAAC TGGAAGGTTA TTTCGAAGAG
GCCGTTCATA GTCTCAAGGG GCTGCCTAAC ATTATCGACA TACGAAACAT TGGCTTAGTC
GGTGGCATTC AATTCTCTCC CAGCGAAGAG GGCGTTGGAA AGCGAGGCTT TGGTATTTTC
GAACATTGCT TTGCCAATGG CACCTTAGTC AGGGCCACCG CAGATATTAT CGCAATATCC
CCCCCATTGA TCATCGATAA GCAGCAGATC GATCAGATAG TCAACACCTT AGGTGATGCT
ATCCGGGCTG TGGGTTAA
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| Protein sequence | MSDSQANMQS ETQSLEHYWM PFTANRQFKS KPRMLAEAQG MYYKDTTGRP VLDGTAGLWC
CNAGHGRKEI SQAVSKQIHQ MDYAPSFQMG HPIAFELAER LAQISPEGLN KVFFTNSGSE
SVDSALKIAI NYHRARGEAT RTRFIGRELG YHGVGFGGIS VGGIGGNRKT FSQQLLPGVD
HLPHTLDMQD NAFSRGMPKT GAEKADVLEQ LVALHGAENI AAVIVEPMSG SAGVILPPEG
YLQRLREITK KYGILLIFDE VITGFGRVGD AFASQRWGVT PDMITTAKAL NNGAIPMGAV
LIDDAIYDAS MQGPDGIELF HGYTYSGHPV AAAAAIATLD IYQNEQLFER SRELEGYFEE
AVHSLKGLPN IIDIRNIGLV GGIQFSPSEE GVGKRGFGIF EHCFANGTLV RATADIIAIS
PPLIIDKQQI DQIVNTLGDA IRAVG
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