| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1034 |
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| Symbol | |
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| ID | 5610318 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 1229557 |
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| End bp | 1232217 |
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| Gene Length | 2661 bp |
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| Protein Length | 886 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 640931882 |
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| Product | PPE repeat-containing protein |
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| Protein accession | YP_001472773 |
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| Protein GI | 157374173 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.313591 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.411811 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAAAAG TCTTGACGGT TTTGAGTCTC TGTATCGCGA CGGCTGTATC ATATTCCGCC
GTCGCCGGAG TTCAGTCCGG GAGTCAGTTT AACGAATGGC AAAAGCTTGC TAACAGAGAC
GATCTCACAC GGGTAAATAG CCAGGCTCTT TCCAGTCAAC AGCTGAGCAC AAATATCGCC
GCACTGAATC AGATACTGTT GACAAACCGC GACTCGGTCA TCATTACCCT GCCTCTACCC
GATGGTAACT TTGCCGACTT TGAGCTCAAA CCTTCCGCTA TAGTCGAGGG AGGGCTTAAT
GAAAAGTATC CCAATATTAA AACCTTCAGT GGTCATGAGT TGGGTAAACC GGACAATCAT
GGCCGTTTCG ATATTACGCC TCAGGGTTTT CATGGTTTAT TCAGATACGG CAAAGAAACG
GTCTTTATCG ACCCTCAATA TCGCGACAGC GATGCTCGCT ATATCAGCTA CTTTCGCAAA
GACGCCATCC CGCTGAATCT AGCAAATATG CCCAAACGCT TGCCACCAAA GATCAGAGAT
AAGAGTCAAC AGGCATTCAC TAGCCATGCC CTCAGAGACG CGGCTATGGT TCCCCAAGCC
ATGGCTTCCC GAGATAAGGA CGCCCAGGCT CAGGCGACTC AACTGAAGAC CTACCGGATA
GCCATCTCCG CCACGGGAGA GTACACCCAG TTCCATGGTG GAACCAAGGA GAGGGGTCTT
GCCGCCGTCA TCACTATGCT CAATCGGGTC AATGATGTTT ATCAGGCCGA TCTGGCGGTG
AAGTTAGAGC TGGTTGCCAA TAATGACTCG CTGATTTTTG TCGACCCGAA TACCGACCCC
TTCGCAAATA CCGATGCCGA TGGTGAAGCC AACACCGGGA TCATAGATAA TGCGATAGGC
AACACCAGTT ACGATGTCGG CCATGTGGTC GGAACCGGAG GTGGCGGACT GGCAGCACTC
GGAGTCATCT GTGACGTCAC AGCCAAGGGT GACGGAGTAA CCGGTAGCCC CAGCCCCACA
GGCGATGCGT TTAATATCGA CTATGTCGCC CATGAGTTAG GTCACCAGTT TGGCGCCGAT
CATACCTTTA ATGGCCTGAC CGATTCCTGC GATGGCAACC GGGCCGACAG CAGTGCTTTT
GAGCCGGGAA GTGGTTCTAC GGTCATGAGC TATGCGGGGA TCTGTGGTCA ACAAAACCTA
CAGGATAACT CTAACCCCTA TTTCCATTCC CATTCGATTG ATGTCATACA GGCCCATATC
ACCACGGGCA CTGGCAGTAG CTGCGCTCAA GTCGGCACGA CGTCGAATAC AAATCCAGAG
GTCAACGCGG GAGCCGACTA TACTATTCCC GCCCGCACTC CCTTTGTGTT GACGGGTAGC
GCAACCGACG CCGATGGCGA TCCCCTCTCC TATGACTGGC AACAATATGA CTTAGGACCG
GCCAGCGCCA GTGCAGCCGA GCAGGTCGAT GACGGTAAAC GCCCTCTGTT CAGGGTCTGG
AACCCGACCA GTCAACCCAG TCGCACCTTG CCGAGACTCG AGGATATTCT GCTCAATAAA
CTGACCATTG GCGAAACCTA TCCAACGACG ACCCGTGAAC TCAACTTTCG CTTAATGGTG
AGAGATGGTA ATCAGGGACT AGCCCGTGAC TCGATGAAAA TCAGCGTGGT CGACACCAGT
CAAGCCTTCG CCGTTATCGA GCCGGCTGCG GGCAGCAGTT GGGCTAATAA CAGTCAGCTC
GTTACCTGGA ATGTCGCCAA TACCGCTTCG GCGCCTATCT CATGCAGTAA GGTGAACATT
CAGCTTTCAA CCAATGGGGG AAGTAGCTTC GATACAGATC TGGCTATGGG GGTCGACAAC
GACGGCAGTC ACGAGGTCAC TCTGACTCAA ATAACGTCGA ATAGCGCCCG CATTAAACTC
TCCTGCGCCG ACAACATATT CTTTGCGGTC AATAACGGCA ACTTCTCTGT TGCTGCGGGG
ACAAACGAGC AGAGTATCGA GATCACCGCT CTTAAGACTC CCCTCACCAT GGATGAGGAT
GGCGAACTGA CATTATCGAC CGATATGTAC CAGTACCAGG GACTCACGGC GACCAGCCTT
ACCCTGCAAG CCGGGAATAA CTACCAGGTG AATGGCAACA CCATCTCACC GACTGCCGAC
TTTAACGGTG AGTTATCCGT CCTTGTCATC GCTCACAGTG GCAGCATAGA GAGTGAGGCA
TTCCCGACAC TTGTCAGCGT CACGGCGGTG AACGATGCGC CCAATGCAGT CAATGATGCA
AGCAGTGTAA GCCAGGACTC ATCGAACAAT GTTATCGACC CCTTAAGCAA TGACAGTGAT
ATCGATAGCG GCGATCAACT CAGCCTGTTA AGTCTCAATT ATACGGGACA AGGCACAGCC
ACTATCATCA ATAACAAGAT AAGCTACACC CCGGCAGCAG GCTTTTCTGG CAGTGAAACC
ATCACTTACA CCCTGCAGGA CTCATCGAAA GCCACTGCCA GTGCAGTCGT CACCATCACA
GTTAATGCCA CAAACACGGG TACCACAGGG GGCAGTGGAA GCGAGACGGG TGGTAGTTCA
TCCGGCGGCG CCTTAGGCTT CTGGTTATTT ATCTTACTGC CATTGCTGGG AGCAAGAGGT
TTAAGAGGGA GAGACCTATG A
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| Protein sequence | MKKVLTVLSL CIATAVSYSA VAGVQSGSQF NEWQKLANRD DLTRVNSQAL SSQQLSTNIA
ALNQILLTNR DSVIITLPLP DGNFADFELK PSAIVEGGLN EKYPNIKTFS GHELGKPDNH
GRFDITPQGF HGLFRYGKET VFIDPQYRDS DARYISYFRK DAIPLNLANM PKRLPPKIRD
KSQQAFTSHA LRDAAMVPQA MASRDKDAQA QATQLKTYRI AISATGEYTQ FHGGTKERGL
AAVITMLNRV NDVYQADLAV KLELVANNDS LIFVDPNTDP FANTDADGEA NTGIIDNAIG
NTSYDVGHVV GTGGGGLAAL GVICDVTAKG DGVTGSPSPT GDAFNIDYVA HELGHQFGAD
HTFNGLTDSC DGNRADSSAF EPGSGSTVMS YAGICGQQNL QDNSNPYFHS HSIDVIQAHI
TTGTGSSCAQ VGTTSNTNPE VNAGADYTIP ARTPFVLTGS ATDADGDPLS YDWQQYDLGP
ASASAAEQVD DGKRPLFRVW NPTSQPSRTL PRLEDILLNK LTIGETYPTT TRELNFRLMV
RDGNQGLARD SMKISVVDTS QAFAVIEPAA GSSWANNSQL VTWNVANTAS APISCSKVNI
QLSTNGGSSF DTDLAMGVDN DGSHEVTLTQ ITSNSARIKL SCADNIFFAV NNGNFSVAAG
TNEQSIEITA LKTPLTMDED GELTLSTDMY QYQGLTATSL TLQAGNNYQV NGNTISPTAD
FNGELSVLVI AHSGSIESEA FPTLVSVTAV NDAPNAVNDA SSVSQDSSNN VIDPLSNDSD
IDSGDQLSLL SLNYTGQGTA TIINNKISYT PAAGFSGSET ITYTLQDSSK ATASAVVTIT
VNATNTGTTG GSGSETGGSS SGGALGFWLF ILLPLLGARG LRGRDL
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