Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_1024 |
Symbol | |
ID | 5609837 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 1218507 |
End bp | 1220294 |
Gene Length | 1788 bp |
Protein Length | 595 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 640931872 |
Product | peptidase M24 |
Protein accession | YP_001472763 |
Protein GI | 157374163 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0006] Xaa-Pro aminopeptidase |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 0.0487462 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGACACAAA CAATCGCCGC TCGTCTGGAC GCCGTTCGCA TCGAAATGGC CAAAGCCAAC CTCGATGCCT TTATCATTCC ACGCGCCGAT GAATATCTGG GAGAATATGT CCCCGAGCGC AACGAGCGTA TGCTGTGGAT CAGTGATTTC ACTGGCTCTG CGGGTATGGT GATCGTGCTT AAAGAGAGTG CGGTGATTTT TGTCGACGGT CGATATACCG TCCAGGTTAA ACAGCAGGTG GATGGCACAC TATTTGAGTA TCTCAGTCTG ACTGACACGC CACAAATTGA GTGGCTCACA GAGACCTTAA CGCCCGATGC ACGAGTGGGT TACGACCCCC GCCTTCACCC ACTTAGCTGG CAAAAAAGTG CTGAAACTAA ATTGGCAAAG GCGCAGATAA GCTTAGTTTC TGTCGATGAA AATCCTATCG ACCTTCACTG GCAGGACAGA CCCGCCGCCT CAACATCACC GGTCGTACTC TTTGACGCTA AGAGTGCGGG TAAGACGAGT CTGCAAAAAC GTCTGGAGAT AGGCGCCGCT ATCGCAAAAG CAGGCGCCGA TACAGGCCTT ATCACCTCGC TCGACTCCTT CTGCTGGTTG CTGAACATTC GCGGTAGTGA TGTCCCCTGT CTGCCTATAG TGTTAGGCAC GGCGCTGCTG CACGCCAATG GTGACATGGT ACTCTTCACT GACATTAAAA AACTTCCCTC AGGCATCAAT GAACATGTGG GGCAAGGTGT CAGCTTCTGC GACGAGACAG AACTTAAATC AGCCCTCGAT AAGTTAGCGG AAACCAGACT GTTGGCCGAT CCTAATTCGG CTAACGCCTG GTCACAACTG ACTGCCCAGC AGGCGGGCGC TACATTGATT GCCGGCTTCG ATCCGGTTTC ACTGCCTAAG GCACAGAAAA ATGAGTCAGA GCTTGCCGGG ATCCGAGCCT GTCATATTCG CGATGGCGTC GCGGTCAGTC GTTTCCTCGC CTGGTTAGAT AAGGAGGTGT CAGCCGGCAA CTTCTATGAT GAGGGCGTCT TATCGGATAA ATTAGAAACC TTCCGTCTCG AAGATGAGCT CTATCGTGAG CCGAGTTTCG ACACTATCTC AGCGGTGGGC GGCAACGCCG CGATGTGCCA TTACAACCAT AACAATGGCA CCCCGGCGAC CATGACCAAC AACAGTCTCT ATCTGGTCGA CTCCGGCGCT CAATACCTCG ACGGCACGAC CGACGTCACC CGCACTTTGG CCATAGGTCA GGTCAGTGAT GAGCAGAAGA AAATGGTCAC CTTAGTACTT AAGGGCCATA TCGCCTTAGA TCAGGCACGC TTTCCAAGGG GCACCACAGG GCAGCAACTC GATGCCTTCG CAAGACAGTA TCTTTGGCAA CATGGCTTCG ACTACGATCA CGGCACCGGA CACGGAGTCG GTCACTTCCT GAGTGTCCAT GAAGGACCAC AGCGTGTAGC GAAAAACAGT AATGATGTTG CCCTGCTTCC CGGCATGGTT ATCTCAAATG AACCTGGCTA CTACCGCGCC GATGAATTTG GCATACGCCT GGAGAACTTA GTGACAGTAC GTCCTTGTGA AGCCTTAGCA AACGCCGAAC GTGAAATATT CGAGTTCGAG GCACTCACGA TGATCCCCAT GGATTCACGC CTCATTGATA AAACACTCTT GAGTGAGGCC GAGATCAACT GGTTTAATGA TTATCATAGA TTGGTATTCG ATACCCTATC GCCATTAATG CAGGGTGAGG AGCTTGCCTG GCTGACAAAC GCAACTAAAA CTATTTAG
|
Protein sequence | MTQTIAARLD AVRIEMAKAN LDAFIIPRAD EYLGEYVPER NERMLWISDF TGSAGMVIVL KESAVIFVDG RYTVQVKQQV DGTLFEYLSL TDTPQIEWLT ETLTPDARVG YDPRLHPLSW QKSAETKLAK AQISLVSVDE NPIDLHWQDR PAASTSPVVL FDAKSAGKTS LQKRLEIGAA IAKAGADTGL ITSLDSFCWL LNIRGSDVPC LPIVLGTALL HANGDMVLFT DIKKLPSGIN EHVGQGVSFC DETELKSALD KLAETRLLAD PNSANAWSQL TAQQAGATLI AGFDPVSLPK AQKNESELAG IRACHIRDGV AVSRFLAWLD KEVSAGNFYD EGVLSDKLET FRLEDELYRE PSFDTISAVG GNAAMCHYNH NNGTPATMTN NSLYLVDSGA QYLDGTTDVT RTLAIGQVSD EQKKMVTLVL KGHIALDQAR FPRGTTGQQL DAFARQYLWQ HGFDYDHGTG HGVGHFLSVH EGPQRVAKNS NDVALLPGMV ISNEPGYYRA DEFGIRLENL VTVRPCEALA NAEREIFEFE ALTMIPMDSR LIDKTLLSEA EINWFNDYHR LVFDTLSPLM QGEELAWLTN ATKTI
|
| |