Gene Ssed_1024 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_1024 
Symbol 
ID5609837 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp1218507 
End bp1220294 
Gene Length1788 bp 
Protein Length595 aa 
Translation table11 
GC content52% 
IMG OID640931872 
Productpeptidase M24 
Protein accessionYP_001472763 
Protein GI157374163 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0006] Xaa-Pro aminopeptidase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value0.0487462 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACACAAA CAATCGCCGC TCGTCTGGAC GCCGTTCGCA TCGAAATGGC CAAAGCCAAC 
CTCGATGCCT TTATCATTCC ACGCGCCGAT GAATATCTGG GAGAATATGT CCCCGAGCGC
AACGAGCGTA TGCTGTGGAT CAGTGATTTC ACTGGCTCTG CGGGTATGGT GATCGTGCTT
AAAGAGAGTG CGGTGATTTT TGTCGACGGT CGATATACCG TCCAGGTTAA ACAGCAGGTG
GATGGCACAC TATTTGAGTA TCTCAGTCTG ACTGACACGC CACAAATTGA GTGGCTCACA
GAGACCTTAA CGCCCGATGC ACGAGTGGGT TACGACCCCC GCCTTCACCC ACTTAGCTGG
CAAAAAAGTG CTGAAACTAA ATTGGCAAAG GCGCAGATAA GCTTAGTTTC TGTCGATGAA
AATCCTATCG ACCTTCACTG GCAGGACAGA CCCGCCGCCT CAACATCACC GGTCGTACTC
TTTGACGCTA AGAGTGCGGG TAAGACGAGT CTGCAAAAAC GTCTGGAGAT AGGCGCCGCT
ATCGCAAAAG CAGGCGCCGA TACAGGCCTT ATCACCTCGC TCGACTCCTT CTGCTGGTTG
CTGAACATTC GCGGTAGTGA TGTCCCCTGT CTGCCTATAG TGTTAGGCAC GGCGCTGCTG
CACGCCAATG GTGACATGGT ACTCTTCACT GACATTAAAA AACTTCCCTC AGGCATCAAT
GAACATGTGG GGCAAGGTGT CAGCTTCTGC GACGAGACAG AACTTAAATC AGCCCTCGAT
AAGTTAGCGG AAACCAGACT GTTGGCCGAT CCTAATTCGG CTAACGCCTG GTCACAACTG
ACTGCCCAGC AGGCGGGCGC TACATTGATT GCCGGCTTCG ATCCGGTTTC ACTGCCTAAG
GCACAGAAAA ATGAGTCAGA GCTTGCCGGG ATCCGAGCCT GTCATATTCG CGATGGCGTC
GCGGTCAGTC GTTTCCTCGC CTGGTTAGAT AAGGAGGTGT CAGCCGGCAA CTTCTATGAT
GAGGGCGTCT TATCGGATAA ATTAGAAACC TTCCGTCTCG AAGATGAGCT CTATCGTGAG
CCGAGTTTCG ACACTATCTC AGCGGTGGGC GGCAACGCCG CGATGTGCCA TTACAACCAT
AACAATGGCA CCCCGGCGAC CATGACCAAC AACAGTCTCT ATCTGGTCGA CTCCGGCGCT
CAATACCTCG ACGGCACGAC CGACGTCACC CGCACTTTGG CCATAGGTCA GGTCAGTGAT
GAGCAGAAGA AAATGGTCAC CTTAGTACTT AAGGGCCATA TCGCCTTAGA TCAGGCACGC
TTTCCAAGGG GCACCACAGG GCAGCAACTC GATGCCTTCG CAAGACAGTA TCTTTGGCAA
CATGGCTTCG ACTACGATCA CGGCACCGGA CACGGAGTCG GTCACTTCCT GAGTGTCCAT
GAAGGACCAC AGCGTGTAGC GAAAAACAGT AATGATGTTG CCCTGCTTCC CGGCATGGTT
ATCTCAAATG AACCTGGCTA CTACCGCGCC GATGAATTTG GCATACGCCT GGAGAACTTA
GTGACAGTAC GTCCTTGTGA AGCCTTAGCA AACGCCGAAC GTGAAATATT CGAGTTCGAG
GCACTCACGA TGATCCCCAT GGATTCACGC CTCATTGATA AAACACTCTT GAGTGAGGCC
GAGATCAACT GGTTTAATGA TTATCATAGA TTGGTATTCG ATACCCTATC GCCATTAATG
CAGGGTGAGG AGCTTGCCTG GCTGACAAAC GCAACTAAAA CTATTTAG
 
Protein sequence
MTQTIAARLD AVRIEMAKAN LDAFIIPRAD EYLGEYVPER NERMLWISDF TGSAGMVIVL 
KESAVIFVDG RYTVQVKQQV DGTLFEYLSL TDTPQIEWLT ETLTPDARVG YDPRLHPLSW
QKSAETKLAK AQISLVSVDE NPIDLHWQDR PAASTSPVVL FDAKSAGKTS LQKRLEIGAA
IAKAGADTGL ITSLDSFCWL LNIRGSDVPC LPIVLGTALL HANGDMVLFT DIKKLPSGIN
EHVGQGVSFC DETELKSALD KLAETRLLAD PNSANAWSQL TAQQAGATLI AGFDPVSLPK
AQKNESELAG IRACHIRDGV AVSRFLAWLD KEVSAGNFYD EGVLSDKLET FRLEDELYRE
PSFDTISAVG GNAAMCHYNH NNGTPATMTN NSLYLVDSGA QYLDGTTDVT RTLAIGQVSD
EQKKMVTLVL KGHIALDQAR FPRGTTGQQL DAFARQYLWQ HGFDYDHGTG HGVGHFLSVH
EGPQRVAKNS NDVALLPGMV ISNEPGYYRA DEFGIRLENL VTVRPCEALA NAEREIFEFE
ALTMIPMDSR LIDKTLLSEA EINWFNDYHR LVFDTLSPLM QGEELAWLTN ATKTI