| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1023 |
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| Symbol | |
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| ID | 5609836 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1217214 |
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| End bp | 1218413 |
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| Gene Length | 1200 bp |
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| Protein Length | 399 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640931871 |
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| Product | response regulator receiver modulated diguanylate phosphodiesterase |
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| Protein accession | YP_001472762 |
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| Protein GI | 157374162 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2200] FOG: EAL domain |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.0438319 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGATTA ATGTTCTGAT CATTGACGAT TCCCTTAGCT CTTGTCGTGT GTTGAGTAAA
CACTTTATGC AGTTGAACGT GGATAGAGTC GAGTACTGCA GCGATGGCCA GACGGCGTTA
CGGACGCTAA CCAAATATAA AGATGATTAT CAGCTGATCG TGGTCGATCT TCACATGCCT
AAAATGGATG GCATCGAGTT GTTAATCAGG CTCAGTAAGA TAGGTTTCAA GGGCGGGGTG
ATCATCGCGT CGGGTATGGA GAGCCGGATA ATTGAAGCCG CTTCTCAGGT CGTCGTGAAT
TCCAGACTAA GGCTGTTAGG CGCCCTGATG AAGCCCGTTT GCTCCTCTCA GCTGAAGATA
TGTATCGAGC GCTTGTTTAT GATGGACAGT GAACTGGCTC CTAAGCAGCC TATGATGAAG
GTCAAGGAGT TGCAGGAAGC GATTAATAGC GACAAGGTGA TTCCCTATTA TCAGGCTCAG
ATGGATGTTA AAACCGGTGA GATAAAAGGT TTTGAGGTGT TGTGCCGTAT TCAGCAGGGC
GAACAACTGC AACTGATCTC ACCGAGCCGC TTTATCGATC TGGCCGAAGA GCATAACCTG
CTCAATACCT TAACCGATAA ACTCATCACC AGGGCGATGG ATGAGTGGAG AGAGATAAGC
CGGGTGAGCT CCTGCTTGGC TAGCAGTATC TCGATAAACC TAACTCCGAA CCAATTAGCA
CAGCGAAGCT GGCCAAATCG CTTGATGCGC TATTGTGAAG CAAAGCAGCT CGAGCCCTCG
AAAGTGACCA TAGAGATAAC TGAAAATCAG GTGCTCAATA AGCAGAGTCA GCACTCGAGC
ATTAGTCGGT TAAGGATGCA TAATTTTGGC GTGGCCATCG ATGATTTCGG AACCGGTTAT
ACCAATCTGT CACAACTATG TAAGTTACCG ATTAGTGAGG TCAAACTCGA TATGAGTCTG
GTTAAAGGGA TCCACTTAGA TCCGCTGGCG CAAACTATCT TGAAATCTCT GCAGGATATC
AGTCAGAGCT TGGGGGTGGA TCTGGTCGCC GAAGGTGTTG AGGATATTCG GGATCTGAAT
TATCTCGAGC AGATCGATGA TTTGCGCCTG CAAGGCTACT TAATTTGTCG ACCAAAACCT
TTTAGTGAGA TCATGCGCTG GTTGAAGGCG CACGAGAAAG TAGGTTGCGG GCAGGTGTAA
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| Protein sequence | MTINVLIIDD SLSSCRVLSK HFMQLNVDRV EYCSDGQTAL RTLTKYKDDY QLIVVDLHMP
KMDGIELLIR LSKIGFKGGV IIASGMESRI IEAASQVVVN SRLRLLGALM KPVCSSQLKI
CIERLFMMDS ELAPKQPMMK VKELQEAINS DKVIPYYQAQ MDVKTGEIKG FEVLCRIQQG
EQLQLISPSR FIDLAEEHNL LNTLTDKLIT RAMDEWREIS RVSSCLASSI SINLTPNQLA
QRSWPNRLMR YCEAKQLEPS KVTIEITENQ VLNKQSQHSS ISRLRMHNFG VAIDDFGTGY
TNLSQLCKLP ISEVKLDMSL VKGIHLDPLA QTILKSLQDI SQSLGVDLVA EGVEDIRDLN
YLEQIDDLRL QGYLICRPKP FSEIMRWLKA HEKVGCGQV
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