| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1022 |
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| Symbol | |
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| ID | 5609949 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 1215527 |
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| End bp | 1216834 |
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| Gene Length | 1308 bp |
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| Protein Length | 435 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640931870 |
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| Product | DEAD/DEAH box helicase domain-containing protein |
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| Protein accession | YP_001472761 |
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| Protein GI | 157374161 |
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| COG category | [J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG0513] Superfamily II DNA and RNA helicases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.0284952 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGATTTG AATCTTTTAG TTTTGCTCCC GAGATTTTAC GTGCTATCTC AGAATGTGGT
TATCAGAAAA TGACGCCAGT TCAACAAGAA GCCATTCCGG CGATCCGCAG AGGCCAGGAT
GTATTAGCCA GTGCGCAAAC GGGCACAGGT AAAACCGCCG CCTTTGCACT GCCGATCCTG
CAGAAGATGT TCGACAATCC GACTGAGACT CAACGATCGA ATACTCGCGC CCTGATCCTG
ACACCAACCC GTGAACTGGC CAGTCAAATA GCCGACAATA TCAATGATTA CAGTAAGTAC
ATGGAAGTTT CGGTATTAAC CATCTATGGT GGTGTAAAGC TGGAGACTCA AGCACAAAAG
CTCAAACGTG GTGCAGACAT CATCGTCGCC ACACCAGGAC GCTTACTCGA GCACCTTCAG
GCGTGTAACT TAAATCTGTC GAATGTCGAC TTTATGGTAT TAGACGAAGC GGATCGTATG
TTGGATATGG GCTTCATCAG CGATATCCAG AAGATCATGC AGGCTGTTAA CAAGAACCGC
CAGAATTTAC TCTTCTCTGC CACCTTCTCT AGCGCAGTGA AGAAACTTGC CAACGATATG
TTGGTCAAGC CAAAACTTAT CAGTGTCGAT AGCCAAAACA GCACCGCCGA TACGGTAAGT
CAGGTGGTCT ACCCGGTAGA GCAGCGTCGT AAGCGAGAGC TGCTGTCTGA ACTTATCGGC
AAGAAAAACT GGCAACAGGT GTTGGTCTTT ACCGCGACGC GTGACGCCGC CGATAAACTG
GTAAAAGAGT TAAACCTCGA TGGTATCACA TCGGCTGTTG TACATGGCGA GAAGGCTCAG
GGTAACCGTC GCCGCGCTCT GCGTGAATTT AAAGAGGGCA AGGTACGCGC CTTGGTGGCC
ACCGAAGTTG CGGCTCGCGG CCTCGATATT CAAGATCTTG AGTATGTCGT TAACTACGAT
CTGCCATTCT TAGCCGAAGA TTATGTGCAC CGTATCGGCC GTACCGGCCG CGCCGGAAAA
TCAGGGGTCG CTATTTCTCT GGTCAGCCGT GAAGAGGAGC GTACCTTAGC CGATATCGAA
AAGCTGATTG GCAAGCAGCT TCGCCGTATC ACGGTCCCGG GCTATGAGGT GGGTAGCCGT
GAGCTGCTTA TCAAGCAAAT TCAGAAACGC CGTAGTTTTG CCAAGAAACA ACAAAGAGAA
GATAACACCG GCGCGCAAAT GATTGCAGAG AAGAATTTGG GCAGCCGAAG AGTTAAAGTT
AAAAACTCAT CGAACAAGGC GCCAACAAAG GTCAAGAAAA TCAGATAA
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| Protein sequence | MRFESFSFAP EILRAISECG YQKMTPVQQE AIPAIRRGQD VLASAQTGTG KTAAFALPIL
QKMFDNPTET QRSNTRALIL TPTRELASQI ADNINDYSKY MEVSVLTIYG GVKLETQAQK
LKRGADIIVA TPGRLLEHLQ ACNLNLSNVD FMVLDEADRM LDMGFISDIQ KIMQAVNKNR
QNLLFSATFS SAVKKLANDM LVKPKLISVD SQNSTADTVS QVVYPVEQRR KRELLSELIG
KKNWQQVLVF TATRDAADKL VKELNLDGIT SAVVHGEKAQ GNRRRALREF KEGKVRALVA
TEVAARGLDI QDLEYVVNYD LPFLAEDYVH RIGRTGRAGK SGVAISLVSR EEERTLADIE
KLIGKQLRRI TVPGYEVGSR ELLIKQIQKR RSFAKKQQRE DNTGAQMIAE KNLGSRRVKV
KNSSNKAPTK VKKIR
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