| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1016 |
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| Symbol | |
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| ID | 5610369 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1210366 |
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| End bp | 1211424 |
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| Gene Length | 1059 bp |
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| Protein Length | 352 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640931864 |
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| Product | permease YjgP/YjgQ family protein |
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| Protein accession | YP_001472755 |
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| Protein GI | 157374155 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0795] Predicted permeases |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.00281225 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.223874 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAGGATTT TAGATCTCTA TATTGCCAGA ACAATAGTCA GTTCCTCTGC TCTATGTTTG
CTTATTCTTA CCGGGCTTTC AGGCATCATT AAATGGGTAG ATCAGCTACG TTTAGTCGGG
CGTGGTAGTT ACACCATGCT CGATGCCGGT ATTTATGTCT TGTTCCTTAT TCCCAGAGAC
TTGGAGATGT TTTTCCCTCT GGGTGTGCTG CTAGGTGCCC TGATTGGCAT GGGGATGCTG
GCATCCAACT CTGAGTTGGT TGTGATGCAG TCTTCGGGCT TGTCTCGTTG GCAGATTACC
CTATCGGCGA TGAAAACCGC CATACCTCTG ATGCTGTTGA TTATGGCGTT AGGTGAATGG
GGGGCCCCGG TTGCGGAGCA AAAAGCCAAT GAATTACAGG CGACCAAACT CTCCGGCGGT
AGCCTGATTA AATCAAGTCG TGGGATCTGG GCCAAAGATG GCGATCTGTT TGTGAATATC
GGTGAAGTCG AAGATATCAA TCATCTGGGT AATATCACCT TGTATGAGTT TGATGAGACG
CTCTCTTTAG TGCGTACCAT TCATGCCGAA CATGGTGTCT ATTCTAATGA CCATTGGCGC
TTAATGGACG TGAGGCAGAC CGATCTGACA GAAGATAAGG TGACACTCAC GGATTTAACG
CTCTACCGTT GGGAGTCGAC CCTGACTCCG GATAAACTGA GTGTCGTTTC GGTTAAGCCT
GAATCGCTCT CAATTCAAGG ACTGATGGGC TACCTGGATT ACCTCAAGGT TAATAATCAG
GATTCTGCCC GATACGAATT GGCACTGTGG CGCAAGCTAC TGCAGCCAGT GACCGTGGGA
GTGATGATGT TAGTCGCGCT CTCTTTCGTG TTTGGTCCGC TAAGAACCGT GACCATGGGA
GCGAGAGTGC TGTTAGGGGT CATCGCCGGA TTCAGCTTCT ATATCAGCAG TGAAATCTTT
GGCCCGCTAA CCTTAGTATA CGGCGTACCG GCATTTATCG GCGCCGGAAT GCCGGCAGTG
ATATTCAGTG CTGGAGCCGT CTACTTTATC AGGAAGTAA
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| Protein sequence | MRILDLYIAR TIVSSSALCL LILTGLSGII KWVDQLRLVG RGSYTMLDAG IYVLFLIPRD
LEMFFPLGVL LGALIGMGML ASNSELVVMQ SSGLSRWQIT LSAMKTAIPL MLLIMALGEW
GAPVAEQKAN ELQATKLSGG SLIKSSRGIW AKDGDLFVNI GEVEDINHLG NITLYEFDET
LSLVRTIHAE HGVYSNDHWR LMDVRQTDLT EDKVTLTDLT LYRWESTLTP DKLSVVSVKP
ESLSIQGLMG YLDYLKVNNQ DSARYELALW RKLLQPVTVG VMMLVALSFV FGPLRTVTMG
ARVLLGVIAG FSFYISSEIF GPLTLVYGVP AFIGAGMPAV IFSAGAVYFI RK
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