| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1014 |
|---|
| Symbol | |
|---|
| ID | 5609625 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | - |
|---|
| Start bp | 1207528 |
|---|
| End bp | 1209036 |
|---|
| Gene Length | 1509 bp |
|---|
| Protein Length | 502 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 640931862 |
|---|
| Product | leucyl aminopeptidase |
|---|
| Protein accession | YP_001472753 |
|---|
| Protein GI | 157374153 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0260] Leucyl aminopeptidase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.0465604 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 0.808003 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAGTTTA GCGTTAAGAG CGGTAGTCCG GAAAAACAAC GTTCGGCCTG TATTGTGGTT
GGCGTGTATG AACCTAGACG TCTGTCTGGT ATTGCTGAGC AGCTTGATAA AATAAGTGAA
GGCTATATCA GTAACTTACT TCGTCGTGGC GATTTAGAAG GAAAACCTGG ACAGATGCTA
CTTTTGCATC ATGTGCCAAA CGTACTAAGT GAGCGAGTAT TACTTGTCGG CTGCGGAAAA
GAGCGAGAGT TAGATGAGCG CCAATATAAG CAGATCATCA CTAAAACGAT TAAGACTCTG
AACGAAACTG GCTCAATGGA AGCCGTTTGT TTTCTGACCG AGTTGCACGT TAAAGGCCGT
GACACCTATT GGAAAGTGCG TGAAGCAGTA GAAACGACTC AAAACAGTCT CTACAGTTTC
GATGCCCTTA AGAGTGCCAA AGGTGAGACT CGTCGTCCAC TGCGTAAACT GGTATTTAAC
GTACCGACGC GTCGCGAACT GACCGTGGGT GAACGCGCCA TCGAGCATGG TATGGCAGTC
TCTGCCGGTA TGCGTCTTTG TCGTGATGTG GCTAACATGC CGCCAAACAT CTGTAACCCG
GCTTATCTCG CTTCTCAGGC TCGTCAAATG GGTGAGAACA GTGAAGAGCT TACCGTGACT
ACGGTTGGCG AAGAGCAGAT GGCTAAACTC GGTATGAACT CATACCTGGC TGTGGGCCGT
GGCAGTGATA ACGAATCGAT TATGACAGTC ATGGAGTACA AGGGTGCCGT CGACAACACC
GAGAAGCCAA TAGTCTTGGT CGGTAAGGGT CTAACCTTCG ACTCGGGTGG TATTTCGCTT
AAGCCTGGCG AAGGCATGGA CGAAATGAAA TATGATATGG GTGGCGCTGC CGGTGTTATC
GGTGCGATGA AAGCCCTGTG TGATATGAAA CTACCGATCA ATGTAGTGGC TATTCTTGCC
GGCTGTGAAA ACATGCCATC GAGCAACGCA TACCGCCCAG GTGATATCCT CACGACTATG
TCGGGTCAGA CTGTCGAAGT GTTAAATACC GATGCCGAAG GTCGCTTAGT CTTATGTGAC
GTATTAACTT ATGTTGAGCG TTTCGATCCT GAATTAGTGG TCGATACCGC AACCTTAACC
GGTGCTTGTG TTATCGCACT GGGTAAGCAC GCATCGGGTC TGTTCTCCGG GCATAACCCA
CTTGCACACG AGCTGTTAAA TGCCGGTGAG CAAAGTGGTG ACCGCGCATG GCGCTTGCCA
ATTTGGGATG AGTACCAAGA GCATTTAGAG AGCCCATTTG CCGATATGAC TAACCTTGGC
GGTCGTCCCG CTGGTGCTAT CACGGCGGCT TGCTTCCTGT CTCGCTTCAC TAAAAAGTAC
AACTGGGCAC ATATCGATGT GGCCGGTACG GCTTGGAACA GTGGTGCTAA TAAAGGTTCT
ACCGGACGTC CGGTACCTTT GTTAACTCAG TTCCTGATCA ACCGAGCGGG TGTTGAGCAA
GGCGATTAA
|
|---|
| Protein sequence | MEFSVKSGSP EKQRSACIVV GVYEPRRLSG IAEQLDKISE GYISNLLRRG DLEGKPGQML
LLHHVPNVLS ERVLLVGCGK ERELDERQYK QIITKTIKTL NETGSMEAVC FLTELHVKGR
DTYWKVREAV ETTQNSLYSF DALKSAKGET RRPLRKLVFN VPTRRELTVG ERAIEHGMAV
SAGMRLCRDV ANMPPNICNP AYLASQARQM GENSEELTVT TVGEEQMAKL GMNSYLAVGR
GSDNESIMTV MEYKGAVDNT EKPIVLVGKG LTFDSGGISL KPGEGMDEMK YDMGGAAGVI
GAMKALCDMK LPINVVAILA GCENMPSSNA YRPGDILTTM SGQTVEVLNT DAEGRLVLCD
VLTYVERFDP ELVVDTATLT GACVIALGKH ASGLFSGHNP LAHELLNAGE QSGDRAWRLP
IWDEYQEHLE SPFADMTNLG GRPAGAITAA CFLSRFTKKY NWAHIDVAGT AWNSGANKGS
TGRPVPLLTQ FLINRAGVEQ GD
|
|---|
| |