| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0996 |
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| Symbol | |
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| ID | 5610217 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1177821 |
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| End bp | 1178564 |
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| Gene Length | 744 bp |
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| Protein Length | 247 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640931844 |
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| Product | pseudouridine synthase |
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| Protein accession | YP_001472735 |
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| Protein GI | 157374135 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
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| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 53 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGCTTACCG GATTACACCG ATTAACTAGT GGTAAAAAAG AGATGGAATC GAAGCGCGCC
AGATTAGACC GATTTATCAG CGTCAATACA GGTATTAACC GTAAACATGT TCGGCTTATG
TTGGCCAAGG GGCGCGTTAG GGTCGATGGT GAGCTTGCCC GTGATATCGA CCAAGTTGTG
GATGAGTTTT CTCATATTTG CCTAGACGAC AAGGTGCTAC AGGCTAACGA GGCCAGTTAT
GTCATGTTGC ATAAGCCCGT TGGAGTGGTG AGTGCGACGA TAGACGATAA ACACAGAACA
GTGATCGACT TGTTAGAGCA AGATGATAAG GAGAGCCTGC ATATCGTGGG TCGATTGGAT
CTCAATACAT CCGGTCTGCT ATTACTTACA AACGATGGGC GTTGGTCGAA GCGGTTAATG
GATCCTGAGC ATAAGGTAGG TAAACTTTAC CGCGTCCATT TGCAGAACCC TCTGACTCCC
GACTATATTT CCGGGTTTGC TCAAGGTATG TATTTTGAGT TTGAAGATAT TACCACCTTG
CCGGCAGAGC TCGAAATTAT CGATAGTTAT ACGGCATTAG TGACGCTTTA TGAGGGGCGC
TACCACCAAA TTAAGCGCAT GTTTGGTCGC TTCCGTAACC CTGTCATAGG ATTACATCGA
ATTTCGGTGG GCAACATAGT ACTCGATAAT AACTTGAAAC CAGGGGAGAG TCGGGTGCTT
ACCCCTAAGG AGATAGCGCT GTAG
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| Protein sequence | MLTGLHRLTS GKKEMESKRA RLDRFISVNT GINRKHVRLM LAKGRVRVDG ELARDIDQVV
DEFSHICLDD KVLQANEASY VMLHKPVGVV SATIDDKHRT VIDLLEQDDK ESLHIVGRLD
LNTSGLLLLT NDGRWSKRLM DPEHKVGKLY RVHLQNPLTP DYISGFAQGM YFEFEDITTL
PAELEIIDSY TALVTLYEGR YHQIKRMFGR FRNPVIGLHR ISVGNIVLDN NLKPGESRVL
TPKEIAL
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