| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0988 |
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| Symbol | |
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| ID | 5609888 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 1172495 |
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| End bp | 1173385 |
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| Gene Length | 891 bp |
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| Protein Length | 296 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 640931836 |
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| Product | UspA domain-containing protein |
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| Protein accession | YP_001472727 |
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| Protein GI | 157374127 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 51 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCATAG TTATGATTGC ATACAGACAT ATCTTAGCCG TAGTCGACAC TCGCTCATCG
ACACAAGACG CTCTGCATAA GGCTCTAATT TTAGTTGATA AAACTCATGC TAAGTTAACT
TTACTGGAAG TCACACCTAA GAATACTCTC CTCTCCCGGC TGACCCATTC AAGTTCAAGC
ATCAACCCGT TTGTCATTCA TAAAAAGTCT ATTGAACAAT ACCGTGCTCA AGGAATCAAA
ATAGAGAGCA AGACTCGCCT CAATAACAGC GTCTCCAAAG CGATATTAGA GGAACTCGAG
CAGGAACAAT ACGATCTCGT CATTCTCAAC TATAAGCACC ATCACCCTCT CTTTCATGAG
TTTTCATTTG CCGATGAATG GCGACTACTC AGGCAAAGTG ACGTTGCCGT GATGCTGGTT
GGAGCAAATG AGTGGAGGGA GAATGGCCAT ATTCTTACCG CTATAGAGAC AGATGATGCG
AGTCATCAAC ACCTTACCTT CAATCAACGA CTACTCGATG AAACCGAGCA TATAGCCAAC
CTTCTCAGTA GCGATATTCA CCTTGTAAAC TGCTTTCTTG AGCAAAATAT CAGTATGGCG
ATAAAGCCTC CCAAGGTGAA ACATCATCGT CTGAATAATC AGAGTAGTCA CTGGATAAAC
TTAGTCGATT CCGCCAAGTC TCATCAGATT GAAAGCAGCC ACTTACATCT GGAAGAGGGG
CTACCGGATC ACATCATCCC CAATATGGCT GAAAAGTATG GAGCCAACAT AGTCATCCTT
GGTGCCGGAG AACATCATGG ATTATTCAGC CAATTTAAAG GGCACACCAG TGAGCACATC
ATAGATCAGC TTAACTGCGA TATTTTCGCA ATCAAGCCAG CATCAAGCTG A
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| Protein sequence | MSIVMIAYRH ILAVVDTRSS TQDALHKALI LVDKTHAKLT LLEVTPKNTL LSRLTHSSSS
INPFVIHKKS IEQYRAQGIK IESKTRLNNS VSKAILEELE QEQYDLVILN YKHHHPLFHE
FSFADEWRLL RQSDVAVMLV GANEWRENGH ILTAIETDDA SHQHLTFNQR LLDETEHIAN
LLSSDIHLVN CFLEQNISMA IKPPKVKHHR LNNQSSHWIN LVDSAKSHQI ESSHLHLEEG
LPDHIIPNMA EKYGANIVIL GAGEHHGLFS QFKGHTSEHI IDQLNCDIFA IKPASS
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