| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0987 |
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| Symbol | |
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| ID | 5609887 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 1169572 |
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| End bp | 1172388 |
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| Gene Length | 2817 bp |
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| Protein Length | 938 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 640931835 |
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| Product | histidine kinase |
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| Protein accession | YP_001472726 |
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| Protein GI | 157374126 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG0642] Signal transduction histidine kinase
[COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.718308 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 45 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTACGCAA CTCAATCAAC GGACCTTACC CCATTTCCCA TCATGGTTTG CAGCAAAGAG
GGCAGTATTC TATCTGTAAA CTCCAGTTTT CAAGATGAAT TCAAAGTTTC AAATGAGATG
GTTTCAGGAG AGCTAGCCTA CCTATTTTTT AACCTGTTTA AAGACCTCAG TGTTACAAAC
AGTTCGGCTT TTATTCATCA TTTAATTGAA AAAAAACAGT TTTTCTCCAC TCTCTCAGTT
AATAGCCAAA ATATTTGTGT CAATGTCAGT ATCAATGATA GCCCATTAAC TCCCGGGGAA
TACTGGCTAA TCGTCAACAG GTGCGGTGAA TGCCGAGCTA AAAAATATCA GGCAAAGCAT
AAGCTTGAAA GGCTAAACCA TGCTATTAAA GGCGCAAATA TTGGGATATG GGAATATAGC
CCGCATTCAA AGTTTTGCTA TTTCTCACTG AAATTCAAAG AGCTTATAGG CTTAGAGATA
GACACCTCCC TCAGTTGGCA GCACTTCAAA AGTATGATCG ATCCAAGGGA TCAACATAAA
TTAGATGTGT ATCTGGATGA TATTTTTGAA CCGGGAACCC GGTTTCACCT CGAATTCAGA
GCCCAAATTA CTGGAAAGGA GCGATGGTTT GAGCTGAGAA GCGAAGCCGT TTTATCGATA
GATAATCACA GTACACATAC AGGTTCATTA ATCGATTGCA CCGAAGCCAA AGAGACACTT
TTTGCATTAC ACGACGCCAA TGAAAGTAAG AATATCGCTC TTGATGCGGG AAATATCGGT
AACTGGCGGG CAGAAATTGA TAGTGAGAAT AACTGGGTGT GGGACTGGGA TAGTCGAGCA
AATAATATGT TTGCACTGCA TCCTGAAGAC ATTGGCAACT TAGATAAATG GGCAGAGAGA
CTCCACCCTG ATGATCTGGA TCGAATCATC GCCGCGGTCG ATCACTCTTT AAGTACCGGT
GAGCTGTTCG ATCAGCAATA CCGCTCAATT TTACCCCATG GAGAGGTAAT CTACGTACAT
GCAAAAGGCA AGGTTGGACA GAACAGAGAC AAACAGAATT GTCGAATCGA TGGGATCTGT
ATCGATCAAT CTCCGATCTT TAAAATTCAA GCCGAATTAC AAAAGGCAAA CGATGAGCTA
GAGGCAAGAG TGACACAACG CACTCAAGAA TTTCAACAGG CCAAAGTGCG GGCAGAGCGG
GCCAATCAAG CCAAAAGCGA ATTCCTCTCT ATGATGAGCC ATGAGCTGCG AACCCCGATG
AACGCCGTTA TCGGCTCCTT AGATCTACTC ACTCTTTCCA AACAAAACCC AGAATCCATG
TCCTTAATAG AAACGGCAAC GACCTCAGCG ACCAACCTGA TCTATATTCT CAATGACATT
CTGGATATCA ATAAAATTGA ATCCGGAAAG ATGCAACTGG AACAGCGCGA CTTTTCAATT
ACTGAGGTGA TCGACAATGT GGTTCAGGTC TTCTTGCCTC TGGCCCATAA GAAGCGACTC
AATCTGCACA TCTACGAAGA CCCACAAATA CCTAAGCTGC TCGAAGGTGA CGCTGTAAAA
GTTCGTCAAA TACTGTTTAA CCTGCTGGGC AATGCGATAA AGTTCACCCA CACAGTGGAG
GGCAAACCCG GGGAGATACG TTTAATCACC AACATTTCAG AACACAACGA CATTATCTAT
AAAATAAGCT TCTCCATTAT CGATAACGGA ATTGGTATCG ACAAAGAAAC ACAAAAAAAA
CTATTCACCC CTTTCATGCA GGCCCAACGG TCAACGACCA GAAAATACGG GGGAACAGGC
CTGGGTTTAG CGATCAGTGG TAATTTGACC AGTATGATGG GAGGAGAGAT AAAGTTAAAC
AGTACCCCCG AACAAGGCTC AACTTTTACC GTGGTTCTCC CATTTTGGCG CTCAAAAGCA
GACTCTTTTC AGTCGCCGTC GGTACTAAAC AATACCTCTG TCGCCCTTAT TAACCTCTCC
GACGACAACA CCTCTCAACG CGTAATAGTT AAACATCTGC AAGCGGAAGG TGCGGCCGTA
GAAACTGTTG AAGCTGCAAT TTATGAGGCT GAACTTATTG AAGATGAGAA TATTGAAACT
GAAAGTACTA AGGCTGAGAA TATTAAAGCT GCACTGCCAT GCTATGACGT CGTATTACTA
CTCATTCAGT CTCTTTCTGC CTCACAAAAA ATACTGCAAA TTCTAGCCCA ATCAGACATA
AACACATCAA ACTTGCTTCT GGCTGCTCCA CGAAAAGAGA TGAGAAAAAT ACGAAAAATA
ATCCCTCAGG TTTCAATATT ACCAACCAAG CCTATGACTA AGGTGCAACT CATATCATCG
GTTCAAAATA TTATCGAGAA TGAACTATGC TTAGACTTGG ATGAACTGGA TATTAACCCG
CTCAGTGTTA ACTCAAGCAT GAACACAATA TCTACAGCAC AAGCCGACGT CTTAGTCGTT
GAAGACAACC CTCTCAATCA AAAATTAATC TTGGAACAAT TATCGACATT AGGTTATCGG
TGCGATCTTG CCGAAGACGG CAACGATGGT ATACAACATT GGAAAAGTAT CGACTACAAG
TTGATCTTAA CCGATTGCCA TATGCCCAAT CTTGATGGTT ACGATATGAC AAAAGAGATC
CGAAATCTGG AACAAGAGCA TAATAAGAAA GCGATCCCAA TCGTAGCGGT GACAGGCGCC
GCGATGAGTG GAGATGCAGA GTATTGTTAC TCAACAGGAA TGAATGACTT TGTCAGTAAA
CCCATTCTAT TAAAAGATCT CAAAAAAATT ATGGATAAGT GGTATAGCAA TGACTGA
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| Protein sequence | MYATQSTDLT PFPIMVCSKE GSILSVNSSF QDEFKVSNEM VSGELAYLFF NLFKDLSVTN
SSAFIHHLIE KKQFFSTLSV NSQNICVNVS INDSPLTPGE YWLIVNRCGE CRAKKYQAKH
KLERLNHAIK GANIGIWEYS PHSKFCYFSL KFKELIGLEI DTSLSWQHFK SMIDPRDQHK
LDVYLDDIFE PGTRFHLEFR AQITGKERWF ELRSEAVLSI DNHSTHTGSL IDCTEAKETL
FALHDANESK NIALDAGNIG NWRAEIDSEN NWVWDWDSRA NNMFALHPED IGNLDKWAER
LHPDDLDRII AAVDHSLSTG ELFDQQYRSI LPHGEVIYVH AKGKVGQNRD KQNCRIDGIC
IDQSPIFKIQ AELQKANDEL EARVTQRTQE FQQAKVRAER ANQAKSEFLS MMSHELRTPM
NAVIGSLDLL TLSKQNPESM SLIETATTSA TNLIYILNDI LDINKIESGK MQLEQRDFSI
TEVIDNVVQV FLPLAHKKRL NLHIYEDPQI PKLLEGDAVK VRQILFNLLG NAIKFTHTVE
GKPGEIRLIT NISEHNDIIY KISFSIIDNG IGIDKETQKK LFTPFMQAQR STTRKYGGTG
LGLAISGNLT SMMGGEIKLN STPEQGSTFT VVLPFWRSKA DSFQSPSVLN NTSVALINLS
DDNTSQRVIV KHLQAEGAAV ETVEAAIYEA ELIEDENIET ESTKAENIKA ALPCYDVVLL
LIQSLSASQK ILQILAQSDI NTSNLLLAAP RKEMRKIRKI IPQVSILPTK PMTKVQLISS
VQNIIENELC LDLDELDINP LSVNSSMNTI STAQADVLVV EDNPLNQKLI LEQLSTLGYR
CDLAEDGNDG IQHWKSIDYK LILTDCHMPN LDGYDMTKEI RNLEQEHNKK AIPIVAVTGA
AMSGDAEYCY STGMNDFVSK PILLKDLKKI MDKWYSND
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