| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0975 |
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| Symbol | |
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| ID | 5612058 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1157924 |
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| End bp | 1159060 |
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| Gene Length | 1137 bp |
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| Protein Length | 378 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640931823 |
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| Product | secretion protein HlyD family protein |
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| Protein accession | YP_001472714 |
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| Protein GI | 157374114 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.0000270967 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATCTAT TACTCATTCT TACTTACACG GCGATCTGTA TTGCCATTTT TAAGATATTT
AAAATTCCAC TGACAAAGTG GACCGTTCCT ACTGCAATAT TGGGAGGTAT TTTTCTCATC
GGCGCCTTGA TCCTGTTGAT GAACTATAAC CACCCCTATA CTCCATTTGC TAAAGAGGTA
TTTGTTACGG TACCGATTAA TCCGGCCGTA CGTGGGATAG TGACGGAAGT TGAAGTTGAA
CCAAATGTTC CTATCAAGAA AGGAGATGTA CTGTTTCGTC TCGACCCACG TCCGTTCGAG
GCCATTGTAA AGCAAAAACG TGCGGCGTTA GTCTCTGCAG AACAAGAGGT TCCACAGCTC
GAGGCTGCAT GGAAAGCTGC ATTAGCCAGC GTCGAGCGTG CGACAGCGGA CAAAGATAGA
ACTAAGTCAG CGTTCGATCG TTATGCCAAA GGTAAGAAGA AAGGTGGCGT GAACTCACCA
TTTACAGAAT TGGAACTCGA TAATAAACGT CAACTCTATC TGGCATCTGA AGCAAGCCTC
TCCGCGGTTA AAGCAGAAGA GCTAAGAGTC CGGCTCGCGT TCCAATCGAA TGTCGATGGC
GTCAATACTA AGGTTGCAGG AATACAGGGA GAGCTCGAGA AAGCGCTGTT TGATCTGGAG
ATGACGGTCG TCAGAGCGCC GAGCGATGGC ATGGTCACTC AGATGGCGCT GCGTCCTGGT
ATTGTGGCGG TACCTATGCC ACTGCGTTCA TTAGTGAGCT TTATTCCCGA GGAGCAGCGG
TATTTTGCCG GTGCTTTCTG GCAGAACTCT CTTTTACGTT TAAAAGAGGG AGATGAGGCC
GAAGTGATCT TAGATGCAGC CCCAGGTGTC GTGTTTAAGG GGCGAGTAGC CAAAATCTTA
CCCGCAATGG CCGAGGGGGA GCTACAATCG CGAGGCGTAT TGATCTCCTC TATGGTATTA
ATGCCAAGAG GGAGGGCGAT AGTCTTGATT GAGCTGGACG ACCATGATGT GAAAAGCGCA
TTTCCTGCCG GCGTAGCGGG TCAGGCGGCC ATCTATACCG AGCATTTCCA TCATGTCTCT
GTAATTCGCA AGGTCCTGCT GAGAATGCAA GGCTGGCTCA ACTACCTGTT TCATTAA
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| Protein sequence | MDLLLILTYT AICIAIFKIF KIPLTKWTVP TAILGGIFLI GALILLMNYN HPYTPFAKEV
FVTVPINPAV RGIVTEVEVE PNVPIKKGDV LFRLDPRPFE AIVKQKRAAL VSAEQEVPQL
EAAWKAALAS VERATADKDR TKSAFDRYAK GKKKGGVNSP FTELELDNKR QLYLASEASL
SAVKAEELRV RLAFQSNVDG VNTKVAGIQG ELEKALFDLE MTVVRAPSDG MVTQMALRPG
IVAVPMPLRS LVSFIPEEQR YFAGAFWQNS LLRLKEGDEA EVILDAAPGV VFKGRVAKIL
PAMAEGELQS RGVLISSMVL MPRGRAIVLI ELDDHDVKSA FPAGVAGQAA IYTEHFHHVS
VIRKVLLRMQ GWLNYLFH
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