| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0947 |
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| Symbol | |
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| ID | 5610878 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1130382 |
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| End bp | 1131410 |
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| Gene Length | 1029 bp |
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| Protein Length | 342 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640931795 |
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| Product | ABC transporter related |
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| Protein accession | YP_001472686 |
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| Protein GI | 157374086 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG3842] ABC-type spermidine/putrescine transport systems, ATPase components |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 33 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCGACAT TAAGTATTAA AGGTGTTCAT AGCCATTATC AGGAGCAACA GGTCTTAAGA
GGCTTGGATT TAACTCTGGC AAAGGGGGAG ATTGCTGCTC TTCTCGGGCC CAGCGGCTGT
GGTAAAACAA CCTTGCTCAG GGCGATTGCG GGCCTGCAAC CTATCACTGA GGGGGAGATC
TGTATTAATG GTCAGATATT ATCCGGCCCC GACCGGTTTG AGCCAAGCGA GCAGCGTGGG
ATCGGCATGA TCTTTCAGGA CTATGCGCTA TTTCCACACC TGAATGTCGC TGACAACATC
TTATTCGGTG TTAAAGATGC AACCAAAGAG CAGAGGAAAG CCAGACTCGA TGAGATGCTT
TCTCTGGTTA AGCTCGATGG CCTGTCAGAG CGATATCCCC ATGAGCTTTC CGGTGGCCAA
CAGCAGCGTG TCTCTATCGC CAGAGCCTTA GCCTATGAGC CGGAACTATT ACTCCTCGAT
GAACCATTTT CAAATATCGA TGCTAAGGTT CGAGGCGAGA TGATGCTGGA GATACGTGCA
ATATTAAAAC AGCGCAATGT CAGTGCGGTC TTTGTGACGC ACAGTAAAGA TGAGGCTTTC
GTTTTTGCCG ACAAACTCGC GCTTTTCAAA GATGGCTATA TTGTTCAATA CGGTACCGCC
GAAGAGCTAT ATACGTCCCC TAAGGATAGA TATGTGGCCG ACTTCTTAGG CAGTGGTAAC
TACATACCCG CATCGGTTAC CGATGCATTC AGCGTCGAGA CTCCCCTGGG AAAATTAGTC
AGTACCCGTG CTTTATCCCA ACCTGTGAGT TATCACGGAG AGATATTGCT AAGACCTCAT
CAGCTTGAGA TAACCCCCGA CGAGGAGGGG GAGGGAGTCA TAGTCGAGCG CCGTTTCTTG
GGCAATATTT GCCACTACCA GGTTCAGATA GCTCAGCAGT TTTATGAGGT TAAAAGTCAA
TTCAGTCAAT TGGCACCAGG TCAGAAAGTA AACCTTCACA CACAGGCACA TTCTTTAGTC
GTATTCTGA
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| Protein sequence | MSTLSIKGVH SHYQEQQVLR GLDLTLAKGE IAALLGPSGC GKTTLLRAIA GLQPITEGEI
CINGQILSGP DRFEPSEQRG IGMIFQDYAL FPHLNVADNI LFGVKDATKE QRKARLDEML
SLVKLDGLSE RYPHELSGGQ QQRVSIARAL AYEPELLLLD EPFSNIDAKV RGEMMLEIRA
ILKQRNVSAV FVTHSKDEAF VFADKLALFK DGYIVQYGTA EELYTSPKDR YVADFLGSGN
YIPASVTDAF SVETPLGKLV STRALSQPVS YHGEILLRPH QLEITPDEEG EGVIVERRFL
GNICHYQVQI AQQFYEVKSQ FSQLAPGQKV NLHTQAHSLV VF
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