| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0945 |
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| Symbol | |
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| ID | 5611154 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1127421 |
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| End bp | 1128428 |
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| Gene Length | 1008 bp |
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| Protein Length | 335 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 640931793 |
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| Product | extracellular solute-binding protein |
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| Protein accession | YP_001472684 |
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| Protein GI | 157374084 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1840] ABC-type Fe3+ transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.248074 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGATCG CAAGAAGTTT GTCCATATTA GGCTTGGTTT GCTTAGCGTC AGCAGCTAAT
GCGGCTGAAA AGCTAACTGT ATATTCATAT CGACAAGCAT TTTTGATTGA CCCTATCCTG
GAAAACTTTA CCAAAGAAAC GGGTATTGAT GTCGAGGTTG TTTTTTCTAA GAAGGGCATT
GCAGAGCGCA TGGTACGTGA AGGGAGACTG TCGCCTGCCG ATATCGTGCT GACATCAGAC
TTCTCACGTT TGATGGAGTT GGTCGATAAA GAGTTAGTGG TACAGGCATC GAGTGAAGTA
TTAAATAATA ATATTCCTAC GAAATTCCGC TCCCCTGATG ATAATTGGTA TTCACTGACG
ATGAGAGTTC GAAATGTATA TTCATCGAAG GAGAGATTGG GGAAACTCGC CATAGATTAT
GAGGACCTTT CCGACCCTAA ATACATGGGT AAGATCTGTA CCCGAAGCGG AAAGCATCCA
TATAACATCT CTTTAGTCGC CTCTATGATT GCTCACCATG GTGAAGCTGA AACGAGAAGC
TGGCTAGAGG GGTTGAAAGC TAACTTAGCC CGTAAACCTC AGGGTAATGA TCGTGCTCAG
GTTAAAGCGG TAAAAGAGGG CTTGTGTGAT ATCGCCATCG GAAATAGTTA CTACCTGGGG
AAAATGCTTC AGGATCCAAA ACAGGTTCCA TGGGCTGAAT CTGTTGAGAT AAACTTCCCG
AATCAGGCCA ACCGTGGTTC GCACATCAAT GTATCGGGAA TGGCATTAGC TAAATATGCA
CCGAACAAAG AGAACGCCAT TAAATTGATG GAGTATCTTT CCGGTGATGA GGCTCAAAAA
GCCTACGCTG AAGTGAATTA TGAGTACCCG ATTAATGAGG ATGTTGCTCC ATCAGAGTTA
GTCGCATCTT GGGGAGACTT TAAGGCCGAC AGCCTTCCTA TCTTCAAGCT TGCCGAGTAT
CACAAAACGG CGGTAAAGCT GTTAGATCAG GTTAAATTCG ATCTTTAG
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| Protein sequence | MKIARSLSIL GLVCLASAAN AAEKLTVYSY RQAFLIDPIL ENFTKETGID VEVVFSKKGI
AERMVREGRL SPADIVLTSD FSRLMELVDK ELVVQASSEV LNNNIPTKFR SPDDNWYSLT
MRVRNVYSSK ERLGKLAIDY EDLSDPKYMG KICTRSGKHP YNISLVASMI AHHGEAETRS
WLEGLKANLA RKPQGNDRAQ VKAVKEGLCD IAIGNSYYLG KMLQDPKQVP WAESVEINFP
NQANRGSHIN VSGMALAKYA PNKENAIKLM EYLSGDEAQK AYAEVNYEYP INEDVAPSEL
VASWGDFKAD SLPIFKLAEY HKTAVKLLDQ VKFDL
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