| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0937 |
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| Symbol | |
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| ID | 5610498 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1119912 |
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| End bp | 1120970 |
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| Gene Length | 1059 bp |
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| Protein Length | 352 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640931785 |
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| Product | phospho-2-dehydro-3-deoxyheptonate aldolase |
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| Protein accession | YP_001472676 |
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| Protein GI | 157374076 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0722] 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase |
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| TIGRFAM ID | [TIGR00034] phospho-2-dehydro-3-deoxyheptonate aldolase |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 33 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTATTACC AAAATGATGA TGTTCGAATT AATAAGATTA AAGAGTTGTT GCCACCCGTC
GCGATCCTTG AGCGATTTCC GGTGACAGAG AACGCATCGG CTACGGTTTT TAATGCGCGA
GAGAGCATAC ATCAGATCTT GAGAAAAAAG GATGATCGCC TTTTAGTTGT AGTTGGCCCA
TGTTCTATTC ATGATCCTAA AGCCGCTCTG GAGTATGGTC AGAAACTCGT TAAATTGCGT
GAACAATATA AAGACCAACT AGAGATCGTT ATGCGAGTTT ATTTTGAAAA ACCGCGTACT
ACAGTTGGCT GGAAGGGGCT GATCAATGAC CCTTACATGG ATAGTAGCTT CAAGTTAAAC
GACGGCCTAA GAACTGCTCG TAAATTACTT CTGGATCTCA ATGATATCGG TATTCCTACT
GCCGGTGAGT TTCTCGATAT GATCACGCCT CAATATGTCG CAGACCTGAT GTGTTGGGGA
GCGATTGGTG CAAGAACTAC CGAGTCTCAG GTTCACCGTG AGCTGGCTTC AGGATTATCT
TGTCCGGTCG GATTTAAGAA TGGCACTGAC GGCACAATTA AAGTCGCCAT AGATGCCATC
GGTGCTGCGA GTGCGCCGCA TCATTTCCTC TCGGTGACTA AGTATGGGCA CTCTGCGATT
GTTGAGACAA AGGGGAATCC TGATTGCCAT ATCATACTCC GTGGTGGTAA AGAGCCTAAT
TATAGTGCCG AACATGTTGC TGAGATCAGT AGTCAGTTAG ATAAGGCTGG CTTAGAGCTC
AATGTGATGA TCGACTTTAG TCATGCAAAT AGCTCGAAGC AATTTAAGCG TCAGGTGTTG
GTTGGCGAAG ATGTTGCGTC TCAGCTAGGA AGTGGTAACC ATAGTGTTTT TGGTGTCATG
ATTGAAAGTA ACTTAATTGA AGGTCGACAG GATTATATCG AAGGTCAGCC ACTGTGTTAT
GGTCAGAGTA TTACCGATGC ATGTATTGGT TGGGATGATA CTGAAAGTAT CATGGCAACC
CTCTCACAGA ACGTGAAGGT TCGCAGGTCG TCGAAGTAA
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| Protein sequence | MYYQNDDVRI NKIKELLPPV AILERFPVTE NASATVFNAR ESIHQILRKK DDRLLVVVGP
CSIHDPKAAL EYGQKLVKLR EQYKDQLEIV MRVYFEKPRT TVGWKGLIND PYMDSSFKLN
DGLRTARKLL LDLNDIGIPT AGEFLDMITP QYVADLMCWG AIGARTTESQ VHRELASGLS
CPVGFKNGTD GTIKVAIDAI GAASAPHHFL SVTKYGHSAI VETKGNPDCH IILRGGKEPN
YSAEHVAEIS SQLDKAGLEL NVMIDFSHAN SSKQFKRQVL VGEDVASQLG SGNHSVFGVM
IESNLIEGRQ DYIEGQPLCY GQSITDACIG WDDTESIMAT LSQNVKVRRS SK
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