| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0931 |
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| Symbol | nrfA |
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| ID | 5611126 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1113449 |
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| End bp | 1114849 |
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| Gene Length | 1401 bp |
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| Protein Length | 466 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 640931779 |
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| Product | cytochrome c552 |
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| Protein accession | YP_001472670 |
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| Protein GI | 157374070 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG3303] Formate-dependent nitrite reductase, periplasmic cytochrome c552 subunit |
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| TIGRFAM ID | [TIGR03152] formate-dependent cytochrome c nitrite reductase, c552 subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.0000109321 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGTGAGAA ATTTAACTAA AAAATCCTTT GCATTAAGTG CATTGGTCGC TGCGAGCTTA
ATGGCTTCTG GTGTGATGGC AAGCGATAAG ACTGAGCCAC GTAATGAAGA ATATAAAGAT
AAGTTTTCTA AGCAATATAA CAGCTGGCAT GATACTGCAG AAAGTAAAGA AGTTGTTGAT
ATGCTTGAAG AAGTGCCTAG CCTAGTCGTG TTGTGGGCAG GTTATGGCTT CGCCAAAGAT
TATAATGCTC CACGTGGTCA CATGTATGCA GTGACTGACG TACGTAACAC ATTACGTACC
GGCGCACCTA AGGCTGCTAC AGATGGTCCA ATGCCAATGG CATGTTGGTC TTGTAAGAGC
CCTGATGTAC CGCGTGTTAT CGAAGAGCAA GGTGAAGATG GTTACTTCAC TGGTAAGTGG
TATAAAGGCG GCGCTGAAAT CGTTAACACT ATCGGTTGTG GCGATTGTCA TGAAAAAGGT
AAGTCTAAGT TACGTGTCTC TCGTCCATTC GCCGAGCGCG CATTTGAAAC ACTAGACACT
CCATTTGCTA AGGCGTCTAA GAAAGACAAG CAGTCAATGG TTTGTGCTCA GTGTCACGTA
GAGTACTACT TCGAGAAGAC TAAAGATAAG AAAGGTTTCG TTAAGTTCCC TTGGGATCAG
GGCGTTACTG TTGAAGCGAT GGAAACTTAC TACGATAACC TTGAGTTTAA AGACTGGACT
CATAAGGTAT CTAAGACGCC TATGCTAAAA GCACAGCATC CTGGTTATGA AACTTGGAAG
CTGGGTGTAC ACGGTCAGAA CAACGTAAGC TGTACTGATT GTCACATGCC TAAAGTTAAG
AATGATAAAG GTCGTAAGTA TACCGATCAT AAAGTGGGTA ACCCATTCGA TCGTTTCGAA
GAGACCTGTG GTACTTGTCA TGAGCAGAGC AAAGAGTTCA TGGTTAACCT AACTAAAGAG
CGTAAAGTTA AAGTTGCTGA CCTGAAAGCA CGTGCTGAAA CTCAGTTAGT TAAAGCTCAC
TTCGAAGCGA AAGCTGCTTG GGATGCCGGT GCAACTGAAG CTGAAATGAA GCCTATTCTG
ACTGATATCC GTCATTCACA GTGGCGCTGG GATTATGCGA CAGCCTCTCA TGGTGTTGCT
GCTCACGCTC CTGATGAAGC GCTACGTGTA TTAGGTACTT CAGTAGATAA AGCGGCCGAT
GCTCGCATCA AGCTAGCTCA ACTACTTGCT GTTAAAGGTG TTAAGCAACC AATTGCTTAC
CCTGATACTT CTACCAAGGC TAAAGCACAA GCTGCCCTAG GTATGGATAT GAAGAAGATG
AACGCTGACA AGGCTGACTT CAAGAAGAAT ACTCTTCCTA AGTGGGAAGC CGAAGCTAAG
AAGCGTGAAG CGACTTACTA A
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| Protein sequence | MVRNLTKKSF ALSALVAASL MASGVMASDK TEPRNEEYKD KFSKQYNSWH DTAESKEVVD
MLEEVPSLVV LWAGYGFAKD YNAPRGHMYA VTDVRNTLRT GAPKAATDGP MPMACWSCKS
PDVPRVIEEQ GEDGYFTGKW YKGGAEIVNT IGCGDCHEKG KSKLRVSRPF AERAFETLDT
PFAKASKKDK QSMVCAQCHV EYYFEKTKDK KGFVKFPWDQ GVTVEAMETY YDNLEFKDWT
HKVSKTPMLK AQHPGYETWK LGVHGQNNVS CTDCHMPKVK NDKGRKYTDH KVGNPFDRFE
ETCGTCHEQS KEFMVNLTKE RKVKVADLKA RAETQLVKAH FEAKAAWDAG ATEAEMKPIL
TDIRHSQWRW DYATASHGVA AHAPDEALRV LGTSVDKAAD ARIKLAQLLA VKGVKQPIAY
PDTSTKAKAQ AALGMDMKKM NADKADFKKN TLPKWEAEAK KREATY
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