| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0930 |
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| Symbol | |
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| ID | 5611125 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 1111500 |
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| End bp | 1113203 |
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| Gene Length | 1704 bp |
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| Protein Length | 567 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640931778 |
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| Product | nitrate/nitrite sensor protein NarQ |
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| Protein accession | YP_001472669 |
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| Protein GI | 157374069 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3850] Signal transduction histidine kinase, nitrate/nitrite-specific |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.000296832 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAAAAG GCAGCTTAAC ATCGACTATT TTAGGTTTAA TGTTAACTTT AATTCTCTTA
TCGAGCGGGT TAGCAACATT TTCCATAATC AATTTGTCGT ATAGTCTCGG AGATGCGAAA
GCCATCAACG CCTCAGGCTC TTTGCGTATG CAAAGCTATC GCCTGATGTT CTACGCCAAT
TCAGGCAGTG ATGAGGCGGA TGAGAAAATT GAGGAGTTTG AAAACACCCT CTACTCAGAT
GCGCTCAAGC GTTCACAAGC CTGGTACAGC TCGAAAGAAT CCACCGATCA ATACCTGCTG
GTTATCGAAA AGTGGAAAGT GATGAAATAT TATATCCAAC AGGAAAACTC GCGTCTCTAT
GCGGCGGCGC TGAAGGATTT CGTCGATACC ATAGATCTCT TGGTTCTGGA GATGGAGCAC
CACGCCGCAT TCAAAATAAA ACTCCTGGCA GCCAGTCAGA TTTTTGGGCT CGGTTTAATG
CTGTTTATCG CTTTTCTGGC TGTTCGTTTT ACCAAGAAAA AAGTCGTGAC TCCTCTCCAT
AAACTGATGG AGTCGGCAAA CACTATCTCT AAAGGTAACT TCGACATAAA GATGCCACCA
ACCGACTATG TTGAACTTAG CGCACTGAGT AATGCCTTAG AGAGCACCGC CAAAGAGCTT
TCGACCCTGT ATAAAGATCT TGAATCACAG GTAAAAGAGA AAACACATGC GCTAACACGT
GCCAATGACG AGCTCACCCT GCTTTACGAT AACCTGGTCA TGCTGCACTC GGGCACACTC
GATATTGACA CCTTAAAACA AGCGTTGAAT CAATTAAGGG CCCATGAACC CCACTCTTTT
TTGCGCTTAG TCATCTGTCA GGACGAAGAA GAGAAGCAGG TCATTGAAGC CGATGGCGGT
TGGCCACTCG CGGCGTCAAA CCAACTCAAT TTCCCCCTGA AATTCGAAGA CAATGAACTT
GGCTATCTGG AGGTCATCTC CACTCAACAG CCAAACCATC CTCTGTTTGA GAACTTTGCC
ATCATGCTCG CGCGATCCAT AGTGATCTAC AGCGCGGGGG AGCAGAAACA ACAGCTTGCC
TTAATGGAGG AGCGTGGGGT GATTGCAAGG GAGCTGCATG ATTCGTTAGG CCAACTACTT
TCATTTCTTA AGATTCAGGT AAACCTGTTA TCTAAGGGGT TAGACAGTGC CTGCAGAAGC
CCTCAAGTTG AGCAGCAGTT ATCTGAGATA AACGAAGGAG TGAATACCGC CTATGTGCAG
CTCAGAGAGC TACTGTCTAC ATTCAGATTG ACCATCAAAG ATCCAAATTT AAGTCATGCT
ATCGAAGCTA TGCTGGAGCA ATTGCGTAGC CAATCTGATG TAAATATTTC ACTCGACTAC
AAATTGCCCC TTCAGCTGTT GGGCGCACAT CAACATATTC ATGTACTGCA ACTAACACGC
GAGGCCACTC TTAACGCTAT CAAGCATGCC GATGCAAAAC ATATTCATAT CCGTTGCTTT
CTGAGCTCAC CGACCGATGT CACAATCAGT ATCAGCGATG ACGGGGTGGG TATCGAACAG
TTAAGAGAGA GGGACCAACA TTTTGGAATA GGCATTATGC ATGAGCGCGC CAGCCGCTTA
TCGGGTATAG TAGAGTTCAG CAGTAACCCT GAGGGGGGAA CAACGGTCAC GCTCACCTTC
CCACCTCAGC AGGAACCATC TTAG
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| Protein sequence | MKKGSLTSTI LGLMLTLILL SSGLATFSII NLSYSLGDAK AINASGSLRM QSYRLMFYAN
SGSDEADEKI EEFENTLYSD ALKRSQAWYS SKESTDQYLL VIEKWKVMKY YIQQENSRLY
AAALKDFVDT IDLLVLEMEH HAAFKIKLLA ASQIFGLGLM LFIAFLAVRF TKKKVVTPLH
KLMESANTIS KGNFDIKMPP TDYVELSALS NALESTAKEL STLYKDLESQ VKEKTHALTR
ANDELTLLYD NLVMLHSGTL DIDTLKQALN QLRAHEPHSF LRLVICQDEE EKQVIEADGG
WPLAASNQLN FPLKFEDNEL GYLEVISTQQ PNHPLFENFA IMLARSIVIY SAGEQKQQLA
LMEERGVIAR ELHDSLGQLL SFLKIQVNLL SKGLDSACRS PQVEQQLSEI NEGVNTAYVQ
LRELLSTFRL TIKDPNLSHA IEAMLEQLRS QSDVNISLDY KLPLQLLGAH QHIHVLQLTR
EATLNAIKHA DAKHIHIRCF LSSPTDVTIS ISDDGVGIEQ LRERDQHFGI GIMHERASRL
SGIVEFSSNP EGGTTVTLTF PPQQEPS
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