| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0924 |
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| Symbol | |
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| ID | 5612494 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 1104746 |
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| End bp | 1106728 |
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| Gene Length | 1983 bp |
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| Protein Length | 660 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640931772 |
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| Product | bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase |
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| Protein accession | YP_001472663 |
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| Protein GI | 157374063 |
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| COG category | [G] Carbohydrate transport and metabolism
[J] Translation, ribosomal structure and biogenesis
[M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0223] Methionyl-tRNA formyltransferase
[COG0451] Nucleoside-diphosphate-sugar epimerases |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 0.68062 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAGCAG TAGTTTTTGC TTACCATAAC ATCGGCTGTG CGGCCGTTCG AAGCCTACTC
GAGGCGGGTG TGGAGATCGC AGCGGTATTT ACCCATGTCG ATGACAGCAA TGAGAATGTG
TTCTTCGAGT CAGTGGCCAA GTTAGCAGCC CGTAACGGTA TTCCGGTATT TGCACCAGAG
GATGTTAATC ACCCTCTATG GGTTGAAAAA ATCCGTCAGA TGCAACCCGA CTCAATTTTC
TCTTTCTACT ACCGTCATAT GTTGAGCCAG GAGATCCTGG ATATCGCCCC TAAAGGCGGC
TTCAACCTAC ATGGTTCTCT TCTACCTAAC TACCGTGGTC GTGCACCGAT CAACTGGGTA
CTTGTTAATG GTGAAACAGA GACAGGTATG ACTCTGCACA CCATGACGGT CAAGCCGGAT
GCGGGCGCAA TAGTCGCTCA GGAAGCGCTG GCTATCACCG ACGCCGATAC GGCAGCCACC
TTGCACAGTC GTATGACCCA TTTGGCAGGT GAGCTACTGA ATAAGGTTAT CCCACAGATC
GTCGCCGGCA CTCACTCTCT GACAGAGCAA GATACAACAA AAGCCAGTTA CTTCGGTCGC
CGTACACCGG CAGATGGTGA AATAAAATGG GCCAATGACT CTCGTACCAT CTTCAACCTG
ATCAGAGCCG TAACCGAGCC TTTCCCGGGT GCATTCTCTT ATCTCGGTGA ACGTAGGGTC
ACCATCTGGG GCGCCACTGC GAGTGAGAAA ACCTATGATG TGACACCGGG TACAATAGTC
GAGACTAAGC CGCTCACCGT AGCCTGTGCA CAAGGTTCGA TAGTGCTTCA TTCTGGTCAA
GCTGAAAACG GCTTATATCT GAGTGGTGAC CAACTCGCCG CCGAAATGTA TCTGGTTGAA
GGGATGCGTT TTGGCCCACA AGCCAGTGCC GTTATCGCCG CCACCCGACG CCAGAAAGTG
CTTATCATGG GCGCTAACGG CTTTATCGGT AATCACTTAA CCAAGCGTCT GCTCGACGAT
GGTAAGTATG AAATTTACGC GATGGACATG AGCTCCAGCC AGATTGAGCA GCATCTGTCT
CATCCCGACT TCCATTTCGT CGAGGGTGAT ATCACCATAC ACAACGAGTG GATCGAATAC
CACATCAAGA AGTGCGACAT AGTACTGCCG CTCGTGGCTA TCGCAACGCC AATCGAATAT
ACACGTAATC CGCTTCGTGT CTTCGAGCTC GACTTCGAGG AAAACCTCAA GATTGTGCGT
GCCTGTGTTA AATACGATAA ACGTATCATC TTCCCATCGA CCTCTGAAGT TTATGGCATG
TGTACCGATG AGGAGTTTGA CGAAGATACA TCACCGCTCA TCACCGGTCC TATCAACCGC
CAACGTTGGA TCTACTCGAC CTCTAAGCAG TTGCTGGATC GTGTAATTTG GGCCTACGGT
AAGAAAGATA ACCTTAAGTT CACCCTGTTC CGTCCATTTA ACTGGATGGG TCCACGCCTG
GACAGCTTGA ACTCTGCTCG CGTCGGCTCT AGCCGTGCGA TCACTCAGCT CATTCTGAAC
CTCGTCGAAG GTACCCCAAT CAAATTGATT GACGGTGGTG AGCAGAAGCG TTGTTTCACC
GATATCTCAG AGGCGATCGA AGCCTTGTTT AGAGTGATCG AAAACAAAGA TGGACTCTGC
GATGGTCAGA TCATCAACAT AGGTTCACCT GACAATGAAG CCAGCATTAA AGTGATGGCC
GAAACCTTAG TCGAGAAGTT CGAAGAGCAT CCACTACGCG ATCAGTTCCC ACCGTTTGCC
GGCTACAACT TAGTTGAAAG CCAGTCTTTC TACGGTGATG GCTATCAGGA TGTTCAACAT
CGTCGCCCTA GTATCAAAAA TGCTAAGAAA CTGCTGAATT GGGAACCGAC TATCATGATG
GATCAAACCA TCGAAGATAC GTTAGACTTC TTCCTGAAAA CGGCTGTTGA AGAGACTAAA
TGA
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| Protein sequence | MKAVVFAYHN IGCAAVRSLL EAGVEIAAVF THVDDSNENV FFESVAKLAA RNGIPVFAPE
DVNHPLWVEK IRQMQPDSIF SFYYRHMLSQ EILDIAPKGG FNLHGSLLPN YRGRAPINWV
LVNGETETGM TLHTMTVKPD AGAIVAQEAL AITDADTAAT LHSRMTHLAG ELLNKVIPQI
VAGTHSLTEQ DTTKASYFGR RTPADGEIKW ANDSRTIFNL IRAVTEPFPG AFSYLGERRV
TIWGATASEK TYDVTPGTIV ETKPLTVACA QGSIVLHSGQ AENGLYLSGD QLAAEMYLVE
GMRFGPQASA VIAATRRQKV LIMGANGFIG NHLTKRLLDD GKYEIYAMDM SSSQIEQHLS
HPDFHFVEGD ITIHNEWIEY HIKKCDIVLP LVAIATPIEY TRNPLRVFEL DFEENLKIVR
ACVKYDKRII FPSTSEVYGM CTDEEFDEDT SPLITGPINR QRWIYSTSKQ LLDRVIWAYG
KKDNLKFTLF RPFNWMGPRL DSLNSARVGS SRAITQLILN LVEGTPIKLI DGGEQKRCFT
DISEAIEALF RVIENKDGLC DGQIINIGSP DNEASIKVMA ETLVEKFEEH PLRDQFPPFA
GYNLVESQSF YGDGYQDVQH RRPSIKNAKK LLNWEPTIMM DQTIEDTLDF FLKTAVEETK
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