Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_0922 |
Symbol | arnT |
ID | 5613260 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 1102180 |
End bp | 1103820 |
Gene Length | 1641 bp |
Protein Length | 546 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 640931770 |
Product | 4-amino-4-deoxy-L-arabinose transferase |
Protein accession | YP_001472661 |
Protein GI | 157374061 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG1807] 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 0.248037 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGATAAGT CAAAAATTAA TCTAGCGGTC ATTGTACCGC TTTTTTTTAT AATGCTTTAT CTGCTACCAC TCGGATTGCG TGATCTCTGG TCACCGGATG AATTAAGGTA TGCAGAAATA GCCCGTGAGA TGGTGGATAG TGGTAACTGG ATAGTACCGA CATTCAATGA CATAAGGTAC TTTGAGAAAC CTGTGATGGG CCACTGGATG AATGCCATCT CTCAGGTGCT CTTCGGTGAG AATAACTTTT CGGTACGCGC CGCCTCGGCT TTCAGCACTC TTGGGGCTGC GTTTTGTTTG TTCCTGCTCG TCGGCCGCTT CGCTAACCGA AAGCAGGCCT GGGTCACCGT ATCTGTATTT CTCAGCCTCT TCTTAGTCTC CAATTTAGGC ACATACAGTG TTCTGGATGG CATGCTAAAC CTCTGGCTCA CCGCCGCATT TACCGCATTT TTCTATGCCG CGGATTCACC GACAACCTCA CAGCGATGCC GCTTCTACGG CCTGGCCGGA CTCTTTTGTG CCTGCGCACT GCTCACCAAA GGTTTTCTGG CATTAGCCCT GCCCGTGATT GTCGTTGTAC CGTTTATGAT CTGGCAGCGA CAGCTGGTCG ATATATTACG TTGGGGTTGG TGGGTGATGT TGGTCGCCCT TATCGTCACT CTCCCCTGGG CCTTGGCAAT ACACGCCGCT GAGCCCGATT ACTGGCATTA CTTCTTCTGG GTTGAACATA TTCAACGCTT CGCCGCCGAG GATGCCCAAC ATACCTCTCC CGCCTGGTAT TATCTGCCTT ACCTGCTGCT CGGGACTCTG CCATGGTTAT TTCTGGCTCC GAGTGCGATT AAACATCTCA AAGGCCACTG GCAATCCCCT CTGCTGAGAT ATGCACTGCT TTGGGCGCTG ATCCCCTTTA TTTTCTTCTC GGCTGCAAAG GGCAAGCTGG TCACCTATAT CTTGCCATGT ATGGCACCTT TGGCGATTAT CTTGGCTCAG GGCATCATCA GCGCCTTTGA GAACAGAGCG AAAGGACTGA AAATAGGTTC TGTCATCAAC TGTGCCTTCT TTAGCTTGAT ATCTGTTGCC GTCATTGTCC TCTTCTATAT GGGACGTTTG CCTCTGGAAG CCGAAGAGTT CTACCGCCCC TGGTTATTGG TGGTGGTCTG TGGCAGCTGG GCGGTGCTGG CTTACATATC AATTAAGGCC AAGAGCTTAG AGGGAAAAAT AGCCAGCTAT ATGTTGATGC CACTCAGCCT CTTCTTGCTG GCTTGGGCCA TAATTCCCAA CATCAGTATC GACTCTAAGA TGCCCGGTCG TTTTTTGGAG CAGGTCAGCC CTTTAGTCAG TGATGATGCC ATACTGATTG CTGACTACCC GAGTACCATG TCTGCATTTA ACTGGTACTT TAAACGTCGC GATGTCTACC TGACAGGCAA CACCGGTGAG GTCAGCTATG GTATCGGCTA CGATGACGCC AAGCACAAGT ATGTCGCCCC ATCGCTACTC GGCGAATTTA TCCGGAAACA GAGTGTCCCC GTGGTTATCC TGTTCAGAGA GATGGATGTG CCACAAAGCC TACCTGAGCC TGATAAACGT ATAGAGAGAG GCAAGTTCAC CCTGGTCTAT TACGATCGAG TAAAGCGCTA A
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Protein sequence | MDKSKINLAV IVPLFFIMLY LLPLGLRDLW SPDELRYAEI AREMVDSGNW IVPTFNDIRY FEKPVMGHWM NAISQVLFGE NNFSVRAASA FSTLGAAFCL FLLVGRFANR KQAWVTVSVF LSLFLVSNLG TYSVLDGMLN LWLTAAFTAF FYAADSPTTS QRCRFYGLAG LFCACALLTK GFLALALPVI VVVPFMIWQR QLVDILRWGW WVMLVALIVT LPWALAIHAA EPDYWHYFFW VEHIQRFAAE DAQHTSPAWY YLPYLLLGTL PWLFLAPSAI KHLKGHWQSP LLRYALLWAL IPFIFFSAAK GKLVTYILPC MAPLAIILAQ GIISAFENRA KGLKIGSVIN CAFFSLISVA VIVLFYMGRL PLEAEEFYRP WLLVVVCGSW AVLAYISIKA KSLEGKIASY MLMPLSLFLL AWAIIPNISI DSKMPGRFLE QVSPLVSDDA ILIADYPSTM SAFNWYFKRR DVYLTGNTGE VSYGIGYDDA KHKYVAPSLL GEFIRKQSVP VVILFREMDV PQSLPEPDKR IERGKFTLVY YDRVKR
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