| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0919 |
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| Symbol | |
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| ID | 5613257 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1099834 |
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| End bp | 1101000 |
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| Gene Length | 1167 bp |
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| Protein Length | 388 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 640931767 |
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| Product | nucleotide sugar dehydrogenase |
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| Protein accession | YP_001472658 |
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| Protein GI | 157374058 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1004] Predicted UDP-glucose 6-dehydrogenase |
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| TIGRFAM ID | [TIGR03026] nucleotide sugar dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.00213667 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.147124 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAAAGTTG TTATCGTTGG AACCGGTTAT GTCGGTCTCT CTAACGCGAT TATTCTGGCT
CAGAATAATG AAGTGGTTGC CTGTGATATT GACGAAGAGA GGGTCAATGC ATTAAACAAT
CGACGCTCAC CGATTGTCGA TAAGGAAGCC GACGAGTACC TGGCCAACAG AGAGTTGAAT
TTAACGGCGA CGCTGGACAA AGAGTCAGCT TTTAAAGATG CACAATACGT TATTGTTGCT
ACGCCTACAG ATTATGATCC TGAAACAAAC TACTTTAATA CCTCGTCTGT CGAGTCAGTA
ATAAAAGAGG TGATCGGTCT GAACCCTGAT GCCACGATCG TGATTAAATC GACAGTGCCG
GTTGGGTATA CCAAGCGTTT AAGTGAAAAG TTGGGTTGTA ACAATATCAT CTTCTCTCCT
GAGTTTTTAC GTGAAGGCAG GGCCGTTCAT GACAATTTAT ATCCATCACG AATTGTCATT
GGTGAACATT CAGAAAGGGC TGAAATCTTT GCTAACATGC TGGTGGAGGG AGCCATTAAG
AAAGATATTC CATTGCTCTT TACCGACGCT ACCGAAGCAG AAGCAATTAA GTTGTTTTCA
AATACCTATC TTGCGATGCG AGTGGCTTAC TTCAACGAGT TAGATACCTA TGCCGAGACA
CATGGTTTGT CATCGAGGCA GATTATCGAA GGGGTAGGGC TGGATCCTCG TATCGGCTCC
CACTATAACA ATCCGTCATT TGGCTATGGT GGTTATTGCC TGCCTAAAGA TACTAAACAG
CTGTTGGCGA ACTACCAGGA TGTGCCTAAT AACTTGATTA GTGCGATTGT CGATGCGAAC
GTGACCCGTA AAGACTTTAT CGCCGATGCC ATCATTAAGC AGAAGCCTGA AACTGTTGGT
CTCTACCGCC TGATTATGAA GTCTGGCTCG GATAACTTCC GTGCCTCTTC GATCCTCGGG
ATCATGAAAC GCATCAAGGC GAAAGGAATT AAGGTCGTGG TTTATGAGCC GGTAATGAAG
GAGAAAGAGT TCTTTCATTC TGAAGTGATT GAAGACCTCA ATGCGTTTAA ACAGATGTCA
GATGTTATCG TCTCTAATCG TATGATGGAT GAGCTCTCAG ACGTTGAAGA TAGAGTTTAT
ACCCGGGATC TCTTCGGCTC CGACTGA
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| Protein sequence | MKVVIVGTGY VGLSNAIILA QNNEVVACDI DEERVNALNN RRSPIVDKEA DEYLANRELN
LTATLDKESA FKDAQYVIVA TPTDYDPETN YFNTSSVESV IKEVIGLNPD ATIVIKSTVP
VGYTKRLSEK LGCNNIIFSP EFLREGRAVH DNLYPSRIVI GEHSERAEIF ANMLVEGAIK
KDIPLLFTDA TEAEAIKLFS NTYLAMRVAY FNELDTYAET HGLSSRQIIE GVGLDPRIGS
HYNNPSFGYG GYCLPKDTKQ LLANYQDVPN NLISAIVDAN VTRKDFIADA IIKQKPETVG
LYRLIMKSGS DNFRASSILG IMKRIKAKGI KVVVYEPVMK EKEFFHSEVI EDLNAFKQMS
DVIVSNRMMD ELSDVEDRVY TRDLFGSD
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