| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0915 |
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| Symbol | |
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| ID | 5614000 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 1095870 |
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| End bp | 1097237 |
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| Gene Length | 1368 bp |
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| Protein Length | 455 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640931763 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_001472654 |
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| Protein GI | 157374054 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3014] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.0669152 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.0164618 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAAAGT GGCTACTGCT CCCTCTGCTC AGCCTTTTAG TCAGTGGCTG TGCACTGAAC
AGCATTTTTA TTAACTATCC CTCACAAATT GCTCCAGTTA AAGCACAGCT CAATACCAGT
ACCCCTATCA AAGGTGTACT CGAGGTCGAA TCCAATATCT CCGGCGCCGA TGGACTCCTG
TACGCGCAGG AAGCCGGGCG GGTGGCACAG ATCAGCGGCG ACTTTGAAGC GAGTAAAAAA
TACTACCAGC AAGCCGTTAC CGGTTACCTT AAGTTTGACG ACAAGGCCAC CTTGAGTGTC
ACCGATATGG GAGCAACTGC CAGCAGCCTA TTTATTAACG ACAATGTGAT CCCCTACCGT
GGACCAGGCT TCGAGCGTGT GATGCTTCAC CAATATCAGG CGTTAAACTA TATTTTTAGT
GGCGATCAAC AGGGCGCATT AGTCGAGGTG AGACGCAGTA ATGATCTGCA AAGCTCCGAG
CAAGCCAGAT ACCAAAAATC GAATGAGTCG GTTCAAGCTA TGGCTAACGG CACTATAGAC
GCCGAAGTCA ACAAACTCGG AAAGGCGGCT GGCACTGTCA CGAGTTCATT TCTTAACGCC
TATAGCTATT ACACGACTGG CGTATTGCAT GAGATCTTAG GCGAGCCTAA CGATGCATTT
ATCGATTACC GTAAAGCCGC ACAGATATCG CCGGATAATC CCTACCTGCA AAAAGATCTG
GTGAGACTGG CGAAACAGCT ATCTATGCCG CAGGCGGGTG AGTTCGAACG TCGCTGGGGT
AAAGCGATAA CAGCAAAGAA AGATCAGGGT GAGGTCATAT TCTTAATTGA ACGTGGGTTT
GTACCTGAAA AACAAAGCTT AACCGTACCA TTTACCATTC ACGGTAACTG GCAAACAGCC
TCACTTGCCA CCTATACTTC TAACTCTCGC CCCGTATCTC CGGGCAAGAT AAAGGGATTA
GGCAAGAACC TGACTGCGGC ACCCATTGCG AACTTAGATG CCTTAGCTAT TACGGCACTC
AAAGAGGAGC TACCCGCCGC ACTCATTCGT CAGGCTGCAC GAGTTTATGC AAAGTCAGAG
ATGGCCAGAA GTGTAGAGAG TGACTCGAAG AAGCGTCATA ACGAAACCGA TATCGCAGTC
ATTGCGATGC AGATCTTTAA TGTCGTCACA GAGCAAGCCG ATAGACGTAG CTGGCTCACG
CTTCCCAAGC AGGCTCAAAT AGCAAGAACC TATCTCAATA ATGGCAGTTA TTCGGTTCAA
CTGGACAATG GCACTCCCGC TCAGGTAGAG GTAAAAAGTG GAAGAACGAC ACTGGTTTGG
GCAGTAGACA CTGGAAATTA CACACGTTTT TATTCAATAA TCATCTAA
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| Protein sequence | MKKWLLLPLL SLLVSGCALN SIFINYPSQI APVKAQLNTS TPIKGVLEVE SNISGADGLL
YAQEAGRVAQ ISGDFEASKK YYQQAVTGYL KFDDKATLSV TDMGATASSL FINDNVIPYR
GPGFERVMLH QYQALNYIFS GDQQGALVEV RRSNDLQSSE QARYQKSNES VQAMANGTID
AEVNKLGKAA GTVTSSFLNA YSYYTTGVLH EILGEPNDAF IDYRKAAQIS PDNPYLQKDL
VRLAKQLSMP QAGEFERRWG KAITAKKDQG EVIFLIERGF VPEKQSLTVP FTIHGNWQTA
SLATYTSNSR PVSPGKIKGL GKNLTAAPIA NLDALAITAL KEELPAALIR QAARVYAKSE
MARSVESDSK KRHNETDIAV IAMQIFNVVT EQADRRSWLT LPKQAQIART YLNNGSYSVQ
LDNGTPAQVE VKSGRTTLVW AVDTGNYTRF YSIII
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