| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0914 |
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| Symbol | |
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| ID | 5613999 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 1095254 |
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| End bp | 1095859 |
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| Gene Length | 606 bp |
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| Protein Length | 201 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 640931762 |
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| Product | hypothetical protein |
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| Protein accession | YP_001472653 |
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| Protein GI | 157374053 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG3417] Collagen-binding surface adhesin SpaP (antigen I/II family) |
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| TIGRFAM ID | [TIGR02722] uncharacterized proteobacterial lipoprotein |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.310752 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.0133601 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGAATTCA CTATGAAACA TTTCAAACTA ATTTTTATGC TAGCTGTAGC CATTGGTCTG
GCAGGTTGCC AATCTAAAGT CGAATACGGC GATGCCACAG AAGTGGAAAC CGTTAACGAA
AACTTCGGCT CAAGCGATCT TCAGGCCATT ACCGCCAAGA TGGTCGACAG CATGTTGACC
TTCCCACCGG TTATGGTTTT GACAGCCAAC GATCGACCAA TCATGTTTGT CGATAAGATT
AAAAACAAGA CTTCTGAGCA TATCGATACC GAATCGGTTA CCGATTCGAT CAGCAATAAA
CTACTGCGGT CGGGTAAGTT CCGCTTTATC GATATGACAA AAGTCGATGC GGTACGTAAG
CAGTTGGATT ATCAAAACAA CGCAGGTATG GTAGACCCAT CGACAGCGAT TAGCTTCGGC
CGTCAAATCG GTGCCCAATA TATGCTTTAC GGCAACCTAT CGAGCATAGT TAAGCAAGAT
GGTAGCACTA AAGATGTCTA CTACAAGATG ACAATGCGTC TGATGGATCT CGAAACAGGC
CTTATCGAAT GGTCTGATGA GAAAGAGATC CGTAAAGTAA AGTCTAAGTC TTTCTTAGGT
TTATAA
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| Protein sequence | MEFTMKHFKL IFMLAVAIGL AGCQSKVEYG DATEVETVNE NFGSSDLQAI TAKMVDSMLT
FPPVMVLTAN DRPIMFVDKI KNKTSEHIDT ESVTDSISNK LLRSGKFRFI DMTKVDAVRK
QLDYQNNAGM VDPSTAISFG RQIGAQYMLY GNLSSIVKQD GSTKDVYYKM TMRLMDLETG
LIEWSDEKEI RKVKSKSFLG L
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