| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0906 |
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| Symbol | |
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| ID | 5614209 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 1081787 |
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| End bp | 1083196 |
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| Gene Length | 1410 bp |
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| Protein Length | 469 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640931754 |
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| Product | sensor histidine kinase |
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| Protein accession | YP_001472645 |
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| Protein GI | 157374045 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG4564] Signal transduction histidine kinase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0178022 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 3 |
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| Fosmid unclonability p-value | 0.0000002134 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAATATTA ACCATAAGTT ACAGCTAATC ACCGTACTTC CACTCATTCT ATCTCTGATA
CTGGTGCTGT TTGTGACTCA AATGCAGTAC CGGGAGCTCT CCCAGCAGGT GGTCGACGTT
TATCGGCAGA GTATTATTGA TCACCGCAAA GAGGAGCTTA AAAATTATCT GGCGATCGCC
AACGTGGCTA TCCAGCATTT CAAGCAAAAT CAGAACAATG ACAGCCAAGC GCCTCAACAA
ACCCAGCAAG ATGTTAAGTC TATGCTGTCC GATATGCGCT TCGGTAAAAA CGGTTACTTC
TTCGCCTACG ATCTGAATGG TAAAAGCCTG GTCTTACCCG ATCAGGAGTG GCGGGTCGGC
AAAAACTGGC TGGACCTAAC CGATGACAAC GGGGTCCCCT TTATCCAGGA GTTAATCTCA
GGAGCGAGAA AAGGCGGTGG TTACCTCACC TACCTGTTTA ACCAGCCCTC CAATGACGGT
CAACTGGGAC AAAAACTTGC CTACGCCGAG GTATTGGGGC AGTGGGAGTG GATGTTTGGT
ACCGGCGTCT ATATTGATGA TATCGATGAG GAGGCGGCAC TGTTAAGCAC CTCTATGAGT
CATCATATCC GCAACACCTC CATCATGACT CTGGTGATCG GTACCTTAGC GGTCAGCGCC
GTATTTATCG GCGGCATCTT TATGCGTGTG GGTGAGAAAC GGCTGGCAAA TGCTAAACTA
AGAACACTCA ACGAACGAAT TTATCAGACT CAGGAAGAGG AATGTAAGCG GGTTTCCAGA
GAGCTGCACG ATGGAGTTAG CCAAACTATT GCCGCGGCCC TTTTTGCTAT GGAAACAGCA
CAGTTGAAAA AAGAATACGG CGGAGACTCC GGGCCGGAGC TGGAGAAGGC AATCACTATG
ACGCGGCAGA TCATGCTCGA TATCCGTAAT ATCTCGCACC AACTACACCC TAGCATCCTC
GCAGACTACG GGCTGGGGGC GGCACTAAAA GAGTTGGGCA GTGAATTTTC CTTGCGTACC
GGTATCAAAG TAAAGGTGCA ACTACTATCG GTGCGCAAGC TTTTGTCAAC CGAACTCAGT
TGCGCACTTT ATCGTATAGT GCAGGAATCA CTGACCAATA TTGAACGTCA CTCGGGGGCA
AAAAATGTGC TTATTTCGCA GACCCTCACC CCGGGATGGC TGACCCTGGA AGTTCATGAT
GATGGCCAGG GCTTTAACTA TGAATGCTAT GAGAAAAAAT CGACCCCCTT TGAGGGAATA
GGCCTGAGAA ATATGAAGGA AAGACTGAGT TTTTATAATG GTGAGCTTAG GGTGGAATCA
GCAATCGGCA AAGGAGTGAC GTTGATAGCG CGTATTCCCC AAAGCGAGCT GCGTTATCAA
GCCGATAGCA CAACAGAGGT GGCATTATGA
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| Protein sequence | MNINHKLQLI TVLPLILSLI LVLFVTQMQY RELSQQVVDV YRQSIIDHRK EELKNYLAIA
NVAIQHFKQN QNNDSQAPQQ TQQDVKSMLS DMRFGKNGYF FAYDLNGKSL VLPDQEWRVG
KNWLDLTDDN GVPFIQELIS GARKGGGYLT YLFNQPSNDG QLGQKLAYAE VLGQWEWMFG
TGVYIDDIDE EAALLSTSMS HHIRNTSIMT LVIGTLAVSA VFIGGIFMRV GEKRLANAKL
RTLNERIYQT QEEECKRVSR ELHDGVSQTI AAALFAMETA QLKKEYGGDS GPELEKAITM
TRQIMLDIRN ISHQLHPSIL ADYGLGAALK ELGSEFSLRT GIKVKVQLLS VRKLLSTELS
CALYRIVQES LTNIERHSGA KNVLISQTLT PGWLTLEVHD DGQGFNYECY EKKSTPFEGI
GLRNMKERLS FYNGELRVES AIGKGVTLIA RIPQSELRYQ ADSTTEVAL
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