| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0903 |
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| Symbol | |
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| ID | 5613061 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1078648 |
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| End bp | 1079337 |
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| Gene Length | 690 bp |
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| Protein Length | 229 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640931751 |
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| Product | LrgB family protein |
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| Protein accession | YP_001472642 |
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| Protein GI | 157374042 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1346] Putative effector of murein hydrolase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.00000464548 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTCCCAGT CAATGTTAGC GGCGATCAGC TTGGTCTTTA CACTCTCTTG CTACTTTTTG
ATTAAACAGC TGTACCTGAA AAAGAGGGTA TGGTGGTTAG CCCCCATCTT GATTGTACCT
GTGGTTATTG TTCTGTTTGT GGTTAGTCTG AAAATCCCTC TGCCTGCCTA TTTTGAATAT
ACTCATTGGC TGGTGGCCCT GTTGGCTCCT GCGACCATCG CATTCTCTGT GCCTATATAT
AGAGAACGAA AATTGATTTT CAGCTATCCG TTAACGATTG GCATTGGCGT GGTGACAGGT
CTGTTGTTAG GGCTCCTCTC ATCATGGGGA TTGATGCAGA TATTTTCACT GCCGCCAGAG
TTGTCCCAAA GTACCTTAGT GCGCTCGGTG TCGACGCCGT TTGCCATGGA AGCCACGTCT
GCATTTGGCG GGGTACCAGA GTTGACCGCC ATGTTGGTAC TGCTCACGGG GATTATCGGT
ATGTTGGTAT GCGAGCCTTT GTTTAAGCTG GCGAAAATAA ATTCACCTTT AGCTATAGGC
GCAGCACTCG GAGCCGCGGC ACATGGCGCG GGAGCCGCAA AAGCCAGTGA GTTTGGTAAA
GAGGAGGGGG TGGTTGCCAG TCTGACTATG ATCTTTACCG GTATCGCTAT GGTGCTTGGT
GCTCCCTTCT TTTCGATTTT CCTGGTCTGA
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| Protein sequence | MSQSMLAAIS LVFTLSCYFL IKQLYLKKRV WWLAPILIVP VVIVLFVVSL KIPLPAYFEY
THWLVALLAP ATIAFSVPIY RERKLIFSYP LTIGIGVVTG LLLGLLSSWG LMQIFSLPPE
LSQSTLVRSV STPFAMEATS AFGGVPELTA MLVLLTGIIG MLVCEPLFKL AKINSPLAIG
AALGAAAHGA GAAKASEFGK EEGVVASLTM IFTGIAMVLG APFFSIFLV
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