| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0900 |
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| Symbol | |
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| ID | 5613959 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1076201 |
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| End bp | 1077133 |
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| Gene Length | 933 bp |
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| Protein Length | 310 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640931748 |
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| Product | hypothetical protein |
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| Protein accession | YP_001472639 |
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| Protein GI | 157374039 |
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| COG category | [S] Function unknown |
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| COG ID | [COG2354] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.0000810038 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGCTGGAG CTAGCCTGTT GTCATTGTTG GATGATATCG CATCTATCCT GGATGATGTC
GCGGTAATGA GTAAGATTGC AGCACGAAAA ACGGCCGGTG TGTTAGGTGA TGATCTCGCA
CTCAATGCCC AGCAGGTGTC GGGCGTTAAT GCCGATAGAG AGTTACCCGT TGTCTGGGCC
GTCGCCCTAG GCTCGCTACG TAATAAATGT ATCTTAGTAC CGGCGGCGCT GCTTATCAGT
GCCTTTATCC CCTGGGCTAT TATCCCTCTA TTGATGTTTG GTGGCCTTTT TCTCTGTTTC
GAAGGGTTCG AGAAGCTGCA TCACAGTTAT GCAAAGAGGA AAGCTAAGCA GTCAGGAGAG
CACTCTGATG AAGAGGTGTT ACCCGAAATT GATGACATTA AGGCTTATGA GCAGCAGAAG
ATCAAGGGGG CGATTCGGAC CGACTTTGTT CTGTCGGCCG AGATAATCGC CATTACCTTG
GGGGTCGTTG CCGAGAGTAG TTTTACGACT CAGGTATTTA CCCTCTCTGC TATCGCATTA
GTGATGACCA TAGGTGTATA TGGTTTGGTC GCCGGTATTG TGAAGTTAGA TGATGCCGGG
CTTTATCTTA GTCAAAGACA AGGTTCTGGC TTGCTGACCC GTTTCGGTCG CTGGTTCGGC
GGTGGGCTTG TGAACGCGGC TCCTCACCTG ATGAGAGGCC TCACCATAGT CGGCACTATC
GCCATGTTTA TGGTGGGAGG GGGGATTCTT ACCCACGGTC TACATGCCGT GAGTGTGCAG
ATTGAATCGA TTGCCCAGTG GGTCGAGCAG TTAGCCGCAG TGGGGCCGAC ACTGGCCTTT
ATCACACCGA GCCTGCTAAA TACGGTGTTT GGCGTCATAG CCGGAGCATT GGCCCTGTTG
ATTGTGTCCG GATTCCAGAA GTTCAGAAGC TGA
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| Protein sequence | MAGASLLSLL DDIASILDDV AVMSKIAARK TAGVLGDDLA LNAQQVSGVN ADRELPVVWA
VALGSLRNKC ILVPAALLIS AFIPWAIIPL LMFGGLFLCF EGFEKLHHSY AKRKAKQSGE
HSDEEVLPEI DDIKAYEQQK IKGAIRTDFV LSAEIIAITL GVVAESSFTT QVFTLSAIAL
VMTIGVYGLV AGIVKLDDAG LYLSQRQGSG LLTRFGRWFG GGLVNAAPHL MRGLTIVGTI
AMFMVGGGIL THGLHAVSVQ IESIAQWVEQ LAAVGPTLAF ITPSLLNTVF GVIAGALALL
IVSGFQKFRS
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