| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0899 |
|---|
| Symbol | |
|---|
| ID | 5613958 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | - |
|---|
| Start bp | 1075093 |
|---|
| End bp | 1075977 |
|---|
| Gene Length | 885 bp |
|---|
| Protein Length | 294 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 640931747 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001472638 |
|---|
| Protein GI | 157374038 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2206] HD-GYP domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.0000973065 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAAATCTC TCGACTTACT CCGCTCTTTA TACTCTATGG CATCCGTTGT TGAAGCAAGA
GATGCCTACA CAGGTGGTCA TTGCTGGCGC GTCGCTCAAC TCAGTGAACT GGTGGCCATT
GAGATGAATC TGGATGAAAG AACCCGTCTG CGTATAGGTT TAGCCGGTTT CCTGCACGAC
TTAGGGAAAG TGGGGGTTCC CGATGCCATC TTGAATAAGA CAGGAAAACT CACCGATGAC
GAATATGAGG TCATTAAAAC TCATCCGAGT ATCGCAGCCG AAGTGCTCAA ACATCACCCC
TTGGGAGATT TAGCGATTAA CGGCGCTCTC GCCCACCATG AAAGACCCGA TGGTAAAGGT
TATCCCAACG GTCTGAGTGA AACTCAAATT CATTTAGATG CCAGTATTAT TTCGGTTACC
GACGCCTTCG ATGCCATGAC CTCTTACCGC CCCTACCGCA ATGGGATGGG GGTCGATAAG
GCTCTCGACA TATTGCAGCA ACACAGTGGA TCTCAGTTCA ATAGCAATGT GGTTGAACAT
TTCTGCTCCA TCGATAGGCA CGATATCGAT GCCATAGTGT TACATAGCGA TCACCATACT
CCCATGCAGG TCTGCCCTAA TTGCGGCCCG GTTGTCGTGG TCTACAAGGA GATGGAGCAA
GGCGATATGA CCTGCTGCCG TAATTGTGGC GGAGAGTTCA GCTTGTTTAT CGAACAGGGT
GTCAGAAGCC TCAAGCCAAC AGGTGGGGTC GCCACTCCCG AACAGTTACA GCCGACAGCC
GATCATAAAC TGATTAGTCG TCTCGCCCAC CGCGCCCTCC CCCTACTTAA AAAGGATCTG
ACCTGGTGGC AGAAGTTGGT AGGAACCGCA GGTAGCTCTA GTTAG
|
|---|
| Protein sequence | MKSLDLLRSL YSMASVVEAR DAYTGGHCWR VAQLSELVAI EMNLDERTRL RIGLAGFLHD
LGKVGVPDAI LNKTGKLTDD EYEVIKTHPS IAAEVLKHHP LGDLAINGAL AHHERPDGKG
YPNGLSETQI HLDASIISVT DAFDAMTSYR PYRNGMGVDK ALDILQQHSG SQFNSNVVEH
FCSIDRHDID AIVLHSDHHT PMQVCPNCGP VVVVYKEMEQ GDMTCCRNCG GEFSLFIEQG
VRSLKPTGGV ATPEQLQPTA DHKLISRLAH RALPLLKKDL TWWQKLVGTA GSSS
|
|---|
| |