| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0898 |
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| Symbol | |
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| ID | 5613957 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 1074254 |
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| End bp | 1074910 |
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| Gene Length | 657 bp |
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| Protein Length | 218 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640931746 |
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| Product | ribose-5-phosphate isomerase A |
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| Protein accession | YP_001472637 |
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| Protein GI | 157374037 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0120] Ribose 5-phosphate isomerase |
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| TIGRFAM ID | [TIGR00021] ribose 5-phosphate isomerase |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.0000872466 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGACACAAG ATGAGATGAA AAAAGCCGCG GGTTGGGCTG CACTGGAATA TGTCGAGAAA
GACAGTATCG TAGGTGTAGG AACAGGCTCT ACCGTGAACC ACTTTATCGA TGCCCTGGCA
ACGATGAAAG CCGATATCGA TGGTGCAGTA TCAAGCTCTG AAGCTTCTAC CGAGAAGATG
AAAGCATTAG GGATCCCGGT TTACGATCTC AACTCAGTCG ACGAACTATC TGTCTATGTC
GATGGCGCCG ATGAGATCAA CGCTCATATG GATATGATCA AGGGTGGCGG AGCTGCATTG
ACACGTGAAA AGATCGTCGC AGCAGTTGCA GACAAGTTTA TCTGTATCGT CGATAACACT
AAAGAGGTGG ATGTTCTGGG TGAGTTCCCA CTGCCGGTAG AAGTTATCCC TATGGCGCGC
TCTTATGTTG CTCGTCAATT GGTAAAACTT GGCGGCGATC CTGTCTACCG TGAAGGTGTT
GTCACAGATA ACGGCAACGT TATCTTAGAT GTGTACAACA TGAAGATAAT GAACCCTAAA
GAACTTGAAG AGCAGATCAA CGCCATCGTC GGTGTTGTCA CTAACGGACT ATTTGCCATG
CGTGGCGCAG ATGTACTGCT AGTGGGTTCT CCTGAAGGAG TTAAAACAGT TAAATAG
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| Protein sequence | MTQDEMKKAA GWAALEYVEK DSIVGVGTGS TVNHFIDALA TMKADIDGAV SSSEASTEKM
KALGIPVYDL NSVDELSVYV DGADEINAHM DMIKGGGAAL TREKIVAAVA DKFICIVDNT
KEVDVLGEFP LPVEVIPMAR SYVARQLVKL GGDPVYREGV VTDNGNVILD VYNMKIMNPK
ELEEQINAIV GVVTNGLFAM RGADVLLVGS PEGVKTVK
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