Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_0897 |
Symbol | |
ID | 5614076 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 1072670 |
End bp | 1073674 |
Gene Length | 1005 bp |
Protein Length | 334 aa |
Translation table | 11 |
GC content | 36% |
IMG OID | 640931745 |
Product | hypothetical protein |
Protein accession | YP_001472636 |
Protein GI | 157374036 |
COG category | |
COG ID | |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.000332189 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
| |
Sequence |
Gene sequence | GTGGAAAGGA AACATCAAGT TTTTGTGTCA TCGACCTATA AAGATTTAGT CGAAGAGCGT AAAGAAGTTA TTCATGCCTT ATTGGAGCTA GATTGTATTC CAGCAGGGAT GGAGTTGTTT CCTGCCACTG ATGAAGATGC ATGGTCTTTA ATAAAAGAAG TTATTGATGA TTGCGATTAT TATTTGTTAA TCATCGCTGG AAAATATGGT TCAGTAAATG TTGAAGGTAT TGGATATACC GAAATGGAAT TCGATTATGC CATTCTTCAA GGCAAACCCG TAATGTGTTT TGTACATGAA AGTATTGAAG AACTTAAAGT AAGTAAAGTA GAAACCTCAG AGCTAGCTAA AGAACGTTTA AATTTATTTC GGAGTAAAGC ACAAGAAAAG CATTGTAAAT TTTGGGTGTC CGCTCATGAT TTAGGAGGAA AAGTATCCAG AAGTCTTATC CAGCTAAAGA AGAAACACCC TTCTGATGGT TGGGTGCCAG GTCGATATGC AGCGGATCAA AAAATGTTAG CTGAGATGGA AAAAATGAGA AGTAAAGTTT CCGAGCTTGA AATGGAGCTG ATGATATCTA AAGACCCCAA ACCTGCTAAC TTTGATGAAT TGGAAAGTGG TAGTGATATT TATTCTTTTC CATTCGGTTT ATTCACGGAT AAAACTAGGA AAGAAAGGGA GTCTGTTAAT TTAGGAGTTA CTTGGGATAA GCTTTTTTCC TATTGTGGTA CAGTTTTGTC TGGGGAGTGC ACGAAAGAAG AATTAGCTGA AAAAATCAAG CTGGCTTATT ATCATGCAAT CCCTAAAGAA CTTAAAGACT TAGTAAAATA TGAAGATATT GTTTTACCTT TTGTATTAAT AGATCAAATT CATGTTCAAT TTCAAGCTCT CGGGCTGATG ATAACCGGTC AGAAAAAAAG GGCTGTAGCA GATAAAAATA CTTATTGGGC GCTTACTTCG TTTGGTGAAA AGTACTTAAT TCAAATAAGA GCGTTAACAA GGTAA
|
Protein sequence | MERKHQVFVS STYKDLVEER KEVIHALLEL DCIPAGMELF PATDEDAWSL IKEVIDDCDY YLLIIAGKYG SVNVEGIGYT EMEFDYAILQ GKPVMCFVHE SIEELKVSKV ETSELAKERL NLFRSKAQEK HCKFWVSAHD LGGKVSRSLI QLKKKHPSDG WVPGRYAADQ KMLAEMEKMR SKVSELEMEL MISKDPKPAN FDELESGSDI YSFPFGLFTD KTRKERESVN LGVTWDKLFS YCGTVLSGEC TKEELAEKIK LAYYHAIPKE LKDLVKYEDI VLPFVLIDQI HVQFQALGLM ITGQKKRAVA DKNTYWALTS FGEKYLIQIR ALTR
|
| |