| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0896 |
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| Symbol | |
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| ID | 5614075 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1071155 |
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| End bp | 1072030 |
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| Gene Length | 876 bp |
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| Protein Length | 291 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 640931744 |
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| Product | LysR family transcriptional regulator |
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| Protein accession | YP_001472635 |
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| Protein GI | 157374035 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.000948666 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAATGTAC CGATTAAGAA TCTACAGTGT TTCCTGACGT TAGTGGAAAC CCGCAGTTAT
ACCCGCGCCG CCGAGCAGCT GCATCTTACT CAGCCCACGT TGAGTAAGAT GATAAAGCGT
CTGGAGGATA CTCTTGAGCA ACCGCTACTC ATTCGTAATA ATCAGAAGGT GATATTGACC
GAAGCCGGCA ACCTGCTGGT TAACAGCTCG CGCAAGATAG TGGGCCAGTG GCATCGATTG
CAGGAGGATC TCAATAATCT TAAGGGCCTT AAAACGGGGC AATTGAGACT CGGCGTATGC
CCCATGATGG GGGGGATCAT CATCTCCTTG CTGTCAGAGT TTCGCAGTCG CTACCCTGGA
ATAGAGCTTC AGATACAGGA GCTGGGCGGG TATGGCGCCG AGGAAGCTCT GCTCAATGAC
AGTTTAGATC TTGCATTCAC GGCCCTGCCG ACCACCCATG CCGAGGAGTT TCATTGTCAG
CCATTAGAGG AATATCCTCT GCAGGTGTGC CTGCCGATAA AACACCCGCT TGCAGATAAA
GAGTCTATCA CCTGGCCTGA TTTGGCGGGC TTGCCTTTCG TGCTCTATAA CGACGATTTT
TCTCTGGCGA AGTTACTCAC CCGTTTGAGC CGGGAGGATG GCGTCGAGCT CAATATCGCC
TCTCAGAGTG GTCAGTGGGA CTTTATTGGC GCCATGGTCG AGTCCAACGT CGGCGTCGCC
ATATTGCCTC AGCCCATCTG TGACAAAATA GGCTCAACTA AACTGGTTTA TAAACCCATG
TCCCCCATGC TGACCTGGGA TCTGGCGCTG ATCTGGCGTA AGAATTTACC CCTGACCCCA
GCCGCGGAAG CGTTTGTAAA GCTGGGAGAG GGATGA
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| Protein sequence | MNVPIKNLQC FLTLVETRSY TRAAEQLHLT QPTLSKMIKR LEDTLEQPLL IRNNQKVILT
EAGNLLVNSS RKIVGQWHRL QEDLNNLKGL KTGQLRLGVC PMMGGIIISL LSEFRSRYPG
IELQIQELGG YGAEEALLND SLDLAFTALP TTHAEEFHCQ PLEEYPLQVC LPIKHPLADK
ESITWPDLAG LPFVLYNDDF SLAKLLTRLS REDGVELNIA SQSGQWDFIG AMVESNVGVA
ILPQPICDKI GSTKLVYKPM SPMLTWDLAL IWRKNLPLTP AAEAFVKLGE G
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