| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0895 |
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| Symbol | |
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| ID | 5614074 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1068380 |
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| End bp | 1070104 |
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| Gene Length | 1725 bp |
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| Protein Length | 574 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 640931743 |
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| Product | single-stranded-DNA-specific exonuclease RecJ |
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| Protein accession | YP_001472634 |
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| Protein GI | 157374034 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0608] Single-stranded DNA-specific exonuclease |
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| TIGRFAM ID | [TIGR00644] single-stranded-DNA-specific exonuclease RecJ |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.00647081 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | GTGATCCATA AGATTGTTCG CCGTCCTAAG GTCGATGATA GTCACCTTCC CAGTACTCTT
TCGCCGCTCT TAAAACAGAT CTACGCCAGT CGTGGTAGTT CAGCCGAAGA TTGTGAGTTA
ACACTGGCTC GCTTATTAAG ACCCGATACC ATGAAAGGGC TTGCCGAGGG CGCAGCCATC
ATTGCCGATG CTATCAAGGC CCAGCGTTCA ATTCTCATCA TGGGGGATTT CGATGCCGAT
GGGGCAACCT CGACCAGCGT CTGCATGCTT GCCCTGACTA TGATGGGGGC CACTAAGGTC
GATTACCTCA TTCCTAATCG GTTCGATTAT GGTTATGGCT TGAGCCCCGA GATCGTCGCC
GTCGCCCATA GCAAGGGGGC CGAGTTATTG ATCACCGTAG ATAACGGGAT CTCATCGATA
GAGGGCGTTG AAGCGGCAAA AGCCTTAGGT ATGCAAGTTG TGATCACCGA TCACCATCTG
CCGGGTAAAA CGGTGCCCGA TGCCGATGCC ATCGTTAACC CGAACCAGGT CGATTGCAAC
TTCGCGAGTA AGTCGATCGC GGGGGTTGGG GTGGCATTTT ATCTGATGTC AGCCTTGAGA
GCCGAACTGG GAAAGCGTAA TTGGTATCAG GAGCAAGGCC TGGTGGTGCC CAATCTGGGG
CAACTGCTGG ATATCGTCGC CCTGGGCACG GTTGCCGATG TGGTCGCCCT AGACAGTAAC
AACAGAATTC TGGTCGAAGC GGGCCTGCAG AGAGTCAGAG CGGGCCGTTG CCGTGCGGGA
ATCACAGCGT TACTGGAGGT GGCCAAACGC AATCCGGCGC GTATTGTCGC ATCTGATTTT
GGTTTCGCTG TCGGGCCCAG GCTCAATGCG GCGGGTAGAT TGGACGAGAT GGCGCTAGGT
GTCGAGACCC TGCTCTGTGA CGACATGATG ACAGCAAGAA GAATGGCGGC CGAGCTCGAT
GGACTCAACG CCGAGCGGCG CGATCTGGAA GCCGATATGC AGCAGGAGGC GTTAAAGAGC
CTGGCATCGG TAGAGCTCAA TGAAGAGGAG CTTCCCTGGG GGATTGCTCT TTTTCAAGAG
GACTGGCATC AAGGCGTGAT AGGCATTCTG GCCTCGCGCA TCAAAGACAG GTACCACAGA
CCAGTGATTG CCTTTGCCGA TGCGGGAGAG GGAGAGATAA AAGGTTCGGC CCGCTCGATA
AAAGGGCTGC ATATGCGAGA TCTGTTAGAG CTGATTAATA CCCGTCACCC GGGAATGATC
CTTAAGTTCG GCGGTCACGC CATGGCGGCG GGTTTGTCCC TAAAGGCGAA AGATTTTCCC
GCGTTTGAGC AGGCTTACGA CCAGAGTGTC AGAGAGCTGT TAAAACCCGA GCTGTTAACC
GGCGAATTAG TCACCGATGG TGAGTTGACC CCGGATGAGA TGAAACTGGA TATAGCGTGG
GAGCTCAGAA ATGCAGGCCC CTGGGGGCAA GAGTTCCCCG AGCCGCTGTT CGATGGTTAT
TTCAAGGTGA TCCAGCAGCG CATTGTGGGT GAGAAACATC TTAAGTTGGT GTTGGAAACC
GAGTGTGGCC AGACCATGCT CGATGCTATC GCCTTCAACG TCGATCTGAC CACCTGGCCG
GATGCAACAA TCAAACATGC CCGGGTGGTG TACAAGCTGG ATGTGAACGA GTTCAGAGGC
AATCAGAGCC TGCAGTTGAT GGTGGATCAG ATTGAGGCAA TGTAG
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| Protein sequence | MIHKIVRRPK VDDSHLPSTL SPLLKQIYAS RGSSAEDCEL TLARLLRPDT MKGLAEGAAI
IADAIKAQRS ILIMGDFDAD GATSTSVCML ALTMMGATKV DYLIPNRFDY GYGLSPEIVA
VAHSKGAELL ITVDNGISSI EGVEAAKALG MQVVITDHHL PGKTVPDADA IVNPNQVDCN
FASKSIAGVG VAFYLMSALR AELGKRNWYQ EQGLVVPNLG QLLDIVALGT VADVVALDSN
NRILVEAGLQ RVRAGRCRAG ITALLEVAKR NPARIVASDF GFAVGPRLNA AGRLDEMALG
VETLLCDDMM TARRMAAELD GLNAERRDLE ADMQQEALKS LASVELNEEE LPWGIALFQE
DWHQGVIGIL ASRIKDRYHR PVIAFADAGE GEIKGSARSI KGLHMRDLLE LINTRHPGMI
LKFGGHAMAA GLSLKAKDFP AFEQAYDQSV RELLKPELLT GELVTDGELT PDEMKLDIAW
ELRNAGPWGQ EFPEPLFDGY FKVIQQRIVG EKHLKLVLET ECGQTMLDAI AFNVDLTTWP
DATIKHARVV YKLDVNEFRG NQSLQLMVDQ IEAM
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