| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0893 |
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| Symbol | |
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| ID | 5609765 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1066274 |
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| End bp | 1067188 |
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| Gene Length | 915 bp |
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| Protein Length | 304 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 640931741 |
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| Product | tyrosine recombinase XerD |
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| Protein accession | YP_001472632 |
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| Protein GI | 157374032 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG4974] Site-specific recombinase XerD |
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| TIGRFAM ID | [TIGR02225] tyrosine recombinase XerD |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.0105661 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGACCGAGT CAAGAGAAGA AACCTATTGC CCCGATCCTC TGATCGAACT CTTTCTCGAT
GACTTGTGGT CGAGCCGCGG CTTGAGCGAT AACACATTGT CGGCCTACCG AACCGACCTC
AATCATTTTG ACCGCCATAT TCAGCGCTCT GGCCAACAAT TGACCGAAGT TTCTCAAGAG
GGGATCCGGG GTTATCTGGA TATCCGCTTC GAACAGGGTT TTGCCCGCAC CAGCAGTGCC
AGATTGGTGA GTAGTCTCAG GCGCTTCTAT GGTTTCTTGG TTATCTGTAA GAAGATTGAG
ATTAACCCTA CTGCGCAGAT CAAATCGCCA AAGATTGCCC GTAAGCTCCC GGGATCACTC
AGTGAGTTCG ATGTCGACAG GTTACTCTCT GAGCCCGATG TTGAGGACTC GATAGAGTGC
CGGGATAAGG CGATGTTAGA GCTACTTTAT GCAACAGGAT TGCGGGTTAC CGAGCTCGTG
AGTCTGACAA TGGAGCAGCT GAGCCTGCGC CAGGGTTTGG TTCGGGTGAT AGGTAAGGGA
GGCAAGGAGA GGTTAGTGCC AATGGGAGAG CTTGCGGTCG ATAATATCGA GTACTACCTT
CAGGGAGCGA GAGCCGAGCT GTTAAAGCAG AAGCAAAGCG ATGTTCTTTT TCCCTCCAAA
CGTGGGGTGA TGATGACGAG GCAAACATTC TGGCATCGGA TTAAACTCTA TGCCCTGCGT
TCCGGCGTCT CTACCGAGCT GTCCCCTCAC ACCTTAAGAC ATGCATTCGC CACTCATCTG
CTGAACCACG GGGCGGATCT TCGTGTCGTA CAGTTATTGC TTGGCCATAG CGATCTGTCG
ACGACTCAGA TCTATACTCA TGTCGCGAAG GCGCGCCTGA GCCAGTTACA CTCTGAGCAT
CATCCACGGG GCTAA
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| Protein sequence | MTESREETYC PDPLIELFLD DLWSSRGLSD NTLSAYRTDL NHFDRHIQRS GQQLTEVSQE
GIRGYLDIRF EQGFARTSSA RLVSSLRRFY GFLVICKKIE INPTAQIKSP KIARKLPGSL
SEFDVDRLLS EPDVEDSIEC RDKAMLELLY ATGLRVTELV SLTMEQLSLR QGLVRVIGKG
GKERLVPMGE LAVDNIEYYL QGARAELLKQ KQSDVLFPSK RGVMMTRQTF WHRIKLYALR
SGVSTELSPH TLRHAFATHL LNHGADLRVV QLLLGHSDLS TTQIYTHVAK ARLSQLHSEH
HPRG
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