| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0888 |
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| Symbol | |
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| ID | 5613618 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 1057205 |
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| End bp | 1060372 |
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| Gene Length | 3168 bp |
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| Protein Length | 1055 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640931736 |
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| Product | acriflavin resistance protein |
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| Protein accession | YP_001472627 |
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| Protein GI | 157374027 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.869514 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGCCAC AAACAGGGAT AATGGCTTGG TTTGCCAGAA ATACGGTTGC CGCTAATTTG
CTCATGGCTT TCCTGATATT CGGGGGGCTA TTCAGTAGTT TTTTTGTCAT CAATAAAGAG
ATATTTCCCT CTTTTGAACT GAACTATCTG CAAATTTCTG TTGCCTATCC TGGCGCAGCT
CCCCAAGAGA TCGAAGAGGG GATCAACATA AAGATTGAGG AATCGATTCA GGATATTGAT
GGCATAAAAA AAGTCACCTC AGTCGCCGGT GAAGGCGTGG GGTCGGTGAC GATTGAGGTT
CAGGACAGCT ATGATCCTCA AGATATTCTG GATGAAGCAA AACTCAGACT CGATGCCATC
TCAACCTTCC CGGATAATAT CGAAAAACCT AACATCTTCC GTATCAAACC AGAAAACAAT
GTTATCTGGG TCTCTGTCTA TGGTGATCTC GACCTGCATG AGATGAAGGA GTTGGCTAAG
AGTATCAGAG AAGATATCAC TTCACTGCCT TCGGTAACTC GTGCAAAAGT CACTGGCGTC
CGTGATTACG AGATAGGCAT TGAAGTATCG GAAGATAAAC TCAGAGAGTA CGGGCTTAGC
TTCGCCCAGG TAGCTAAAGC GGTGCAAAGC TCCTCAATCG ATCTTCCCGG TGGTTCTATT
CGGGCACAGG ATGGCGACAT CCTACTGAGA ACCAAAGGTC AGGCGTACAC CGGCGAAGAC
TTTTCTAAAA TCGTGGTGTC GACCCGAACC GACGGTAGCC GAATTATGCT GCCACAGGTC
GCCACGATTA AGGATGATTT TGAGGAGCGA CTGGAGTACA CCCGCTTTAA CGGAAAACCC
GCGGCGATTA TCGAAGTCAC CAGTATTGAC GATCAAAACG CACTGGATAT CTCAGCTGAG
GTGAAAGAGT ATATCGCCGA GCGTAGTAAG ACTCTGCCCG CCTCTGCCAA ACTTGATACC
TGGGGCGACC TGACTCATTA CCTCAAGGGA CGTTTGAACA TGATGTTATC CAACATGTTC
TACGGCGCCG TGTTGGTATT TCTGATCCTC GCCCTCTTCC TTGACGTTAA GCTCGCCTTC
TGGGTAATGA TGGGGTTGCC GGTCTGCTTT TTAGGCACCG CATTATTAAT GCCTATCGAA
CCGTTTTCGA TGTCGATTAA CCTATTAACC CTATTCGCCT TCATTCTGGT ACTCGGTATC
GTCGTCGATG ATGCCATCGT GATAGGAGAG AGTGCCTATA GTGAAACCGA GCGGCATGGC
CATTCCCTCG ATAATGTCAT TAAAGGCGCA AAAAAGGTCG CCATGCCAGC CACCTTCGGG
GTATTAACCA CCATAGCGGC CTTTATTCCC ATGTTAATGG TATCGGGCCC TCAGGGGATC
ATCTGGAAAT CTATTGGGAT GATTGTCATC CTCTGTCTGG CCTTCTCCTT GGTAGAATCT
AAGCTGATCT TACCCGCGCA CCTGGCTCAT ATGAAGCCGA AAAAACCGAA CCTTAACCCT
AATGTCTTTG TGCGTTTTAA AATTGCACTT AACAATAAGG TCCAGCATTT TATCCACCAT
AAATATCGCT ATTTTTTAGA AACCTGTATC AAGAATAGAT ATAGCGTTGT AGCCGTCTTT
ATTGGCGTGC TCATTCTTTC TATCGCACTG GTTGTGAGTG GCACGGTGCG TTGGGTCTTC
TTCCCCGATC TGCCTTCTGA CTTTATTCAA GTTCAGCTGG AGATGGAACC TGGCAGCTCT
GAAGAGAATA CGTTAAAGGT GGTGAAAGAG ATTGAAGATG CGCTCTATAC CATGAATCAA
CAGATAGAGG ATGAAGTGGG CTATCCGGTC GTTAAGCACA GCTTTATCGA CATGAGCTCG
CGCACCTCAG CCTTCATCTT TGCCGAACTC ACCAAAGGAG AAGATCGTGA AGTCGATGGG
GTGAGAATCG CCAACCTCTG GCGTGAAAAC ATACCTGAAC AGCTCTCGGT CAAGAAGCTT
AATATCAATG CCAGCACCAA TGATGCAGGC GCCGATATCT CATTCAGGCT CTCTTCCAGT
AATTTAGAGC AGCTAGCGTT AGCCTCCGCC GAGCTTAAGC AGAAGCTTAA AACCTATGAA
GGTATCTATG ACATTTCCGA TAACTATTCA TCGGGAAGCC ATGAGATCCG CCTCAATATT
AAACCCGAAG CTGAAGCTCA AGGCCTGACC CTGTCGGATC TAGCCAGCCA GGTTCGCTAC
GGTTTCTACG GCTTCGAAGC GCAGAGGATA TTGAGAAATA AGGAGGAGGT GAAGGTGATG
GTGCGCTATC CGCTCGATCA GCGCCGCTCT GTAGGTCATC TTGAAAATAT GATGATCCGC
ACCCCCAGTG GGATCTCAGT CCCCTTCTCT ACTGTGGCCG AAATTGAACT GGGGGACTCC
TACTCATCGA TCACACGTGT CGATGGACGC CGTGCTATAT CCATTATCGC CAATGCTGAT
AAAGATAAGG TAGAGCCATC TAAAATCGTC GCCGAAATTC AGGAGGAGTT TCTACCCTAT
TTAGAAGCTC AATACCCACA AATTTCGACA ACGTTAGACG GTGGCAGTGC AGATGAACAG
AGTGCACTAA TTAGCTTAGT GCAAGGTTTC TTGTTCGCGC TATTTGCCAT CTATGCCTTG
ATGGCGATAC CGCTTAAATC CTATAGCCAG CCATTGATCA TCATGGCCGT GATCCCATTT
GGTATCATAG GGGCATTGTT TGGTCACCTG ATCCAGGGCT TGGCACTCAA TATCCTCAGT
CTATGTGGCA TTGTTGCGCT TGCGGGCGTC GTCGTGAATG ACTCGCTCAT CCTGGTCGAC
TTTGTAAATA AGGCGCGTGC ACAGGGGCAA TCGATAACCC AAGCAGCCGT TGACTCTGGA
TGCCATCGTT TCCGCGCGAT TATCTTAACG TCATTAACGA CTTTTGTGGG CCTTGTCCCC
ATCCTTTTGG AGACCAGTTT ACAAGCACAG ATCGTGATCC CGATGGCAAC CTCACTCGCC
TTCGGTATCT TGTTCTCTAC TGTGGTGACG CTGATTTTGA TCCCCTTGCT TTATATCGTA
CTCGACGATG CTAAGCGGCT TTTGTCATGG ATAGGGAGAG CACTGCGACG TTTCTATATC
TGGTGGTGGC AACCAAAACC CGCACATAGC CAAGATGATA TGGCTTAA
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| Protein sequence | MAPQTGIMAW FARNTVAANL LMAFLIFGGL FSSFFVINKE IFPSFELNYL QISVAYPGAA
PQEIEEGINI KIEESIQDID GIKKVTSVAG EGVGSVTIEV QDSYDPQDIL DEAKLRLDAI
STFPDNIEKP NIFRIKPENN VIWVSVYGDL DLHEMKELAK SIREDITSLP SVTRAKVTGV
RDYEIGIEVS EDKLREYGLS FAQVAKAVQS SSIDLPGGSI RAQDGDILLR TKGQAYTGED
FSKIVVSTRT DGSRIMLPQV ATIKDDFEER LEYTRFNGKP AAIIEVTSID DQNALDISAE
VKEYIAERSK TLPASAKLDT WGDLTHYLKG RLNMMLSNMF YGAVLVFLIL ALFLDVKLAF
WVMMGLPVCF LGTALLMPIE PFSMSINLLT LFAFILVLGI VVDDAIVIGE SAYSETERHG
HSLDNVIKGA KKVAMPATFG VLTTIAAFIP MLMVSGPQGI IWKSIGMIVI LCLAFSLVES
KLILPAHLAH MKPKKPNLNP NVFVRFKIAL NNKVQHFIHH KYRYFLETCI KNRYSVVAVF
IGVLILSIAL VVSGTVRWVF FPDLPSDFIQ VQLEMEPGSS EENTLKVVKE IEDALYTMNQ
QIEDEVGYPV VKHSFIDMSS RTSAFIFAEL TKGEDREVDG VRIANLWREN IPEQLSVKKL
NINASTNDAG ADISFRLSSS NLEQLALASA ELKQKLKTYE GIYDISDNYS SGSHEIRLNI
KPEAEAQGLT LSDLASQVRY GFYGFEAQRI LRNKEEVKVM VRYPLDQRRS VGHLENMMIR
TPSGISVPFS TVAEIELGDS YSSITRVDGR RAISIIANAD KDKVEPSKIV AEIQEEFLPY
LEAQYPQIST TLDGGSADEQ SALISLVQGF LFALFAIYAL MAIPLKSYSQ PLIIMAVIPF
GIIGALFGHL IQGLALNILS LCGIVALAGV VVNDSLILVD FVNKARAQGQ SITQAAVDSG
CHRFRAIILT SLTTFVGLVP ILLETSLQAQ IVIPMATSLA FGILFSTVVT LILIPLLYIV
LDDAKRLLSW IGRALRRFYI WWWQPKPAHS QDDMA
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