Gene Ssed_0875 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_0875 
Symbol 
ID5611871 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand+ 
Start bp1042100 
End bp1043122 
Gene Length1023 bp 
Protein Length340 aa 
Translation table11 
GC content47% 
IMG OID640931723 
Producterythrose 4-phosphate dehydrogenase 
Protein accessionYP_001472614 
Protein GI157374014 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0057] Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase 
TIGRFAM ID[TIGR01532] D-erythrose-4-phosphate dehydrogenase
[TIGR01534] glyceraldehyde-3-phosphate dehydrogenase, type I 


Plasmid Coverage information

Num covering plasmid clones3 
Plasmid unclonability p-value0.000232756 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones29 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATCAGAG TCGCAATCAA TGGATATGGC CGTATCGGTC GTTCAATTCT TCGTGCTCTT 
TACGAGTCGG GTAAACGCGA TCAGATTCAG ATCGTGGCCA TCAATGAACT CGCAACACCA 
GAAGCCATGC TTCATCTTAC TCAATACGAT ACGACCCACG GACGCTTTCA ATCTCAGGCT 
GCTCTCGATG CTGACGGCCA TAAAATGGTT ATCGGTGATG ATGCCATTAC GCTTTTACAT 
GAAAGTGATC CTAGTCAGCT CCCGTGGCGG GAGATGGATA TCGATATTGT TTATGAAGCG 
ACGGGAGCGT TTTCCGACAG AGCAAGCTGT GAAGCTCATG TCCATGCCGG TGCGAAACAA 
GTATTGATAA GTCACCCCTC CTCGAGCGAT GTCGATGCGA CGATTGTCTA TGGGGTCAAT 
CACCACCTTC TTAAAGCAGA GCATACAGTG GTCTCCAATG CCTCATGTAC AACAAACTGT 
ATTGTGCCTG TCATCGAAGT GTTAGATGAA CACTTTAAAG TGAAAAGCGG AGCCATAACG 
ACGATTCACT CCGCGATGAA TGACCAGCAA GTGATCGATG CCTATCATGT CGATCTGCGA 
AGAACGCGCG CTGCAGGTCA GTCAATTATT CCGGTCGATA CCAAGTTAGC CAGAGGAATC 
GAGCGCATAT TGCCTCAGAT GAAAGATAAA TTTGAAGCTA TTTCGGTGCG GGTACCCACG 
ATCAATGTCA CAGCTATCGA TCTTTCTGTG ACTCTGGAAT CAAGAGTTGA CATTGCTCAC 
GTAAATCGGG TGCTTTCTAC TTCCTCTACA GGCCTCTATA AGGGCGTTTT AGGCTATACT 
AATGAGCCAT TAGTATCGTG TGATTTTAAC CACGATCCAA GATCCAGCAT AGTCGATGGT 
ACTCAGACCC GAGTCAGTGA TGGCCATTTA GTGAAGCTGC TCCTATGGTG CGACAACGAA 
TGGGGCTTCG CTAACCGCAT GTTAGATACC AGTTTAGAGA TGATAAAGGC GATAAGAGCT 
TAA
 
Protein sequence
MIRVAINGYG RIGRSILRAL YESGKRDQIQ IVAINELATP EAMLHLTQYD TTHGRFQSQA 
ALDADGHKMV IGDDAITLLH ESDPSQLPWR EMDIDIVYEA TGAFSDRASC EAHVHAGAKQ 
VLISHPSSSD VDATIVYGVN HHLLKAEHTV VSNASCTTNC IVPVIEVLDE HFKVKSGAIT 
TIHSAMNDQQ VIDAYHVDLR RTRAAGQSII PVDTKLARGI ERILPQMKDK FEAISVRVPT 
INVTAIDLSV TLESRVDIAH VNRVLSTSST GLYKGVLGYT NEPLVSCDFN HDPRSSIVDG 
TQTRVSDGHL VKLLLWCDNE WGFANRMLDT SLEMIKAIRA