| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0874 |
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| Symbol | |
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| ID | 5611870 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1039848 |
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| End bp | 1041839 |
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| Gene Length | 1992 bp |
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| Protein Length | 663 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640931722 |
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| Product | transketolase |
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| Protein accession | YP_001472613 |
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| Protein GI | 157374013 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0021] Transketolase |
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| TIGRFAM ID | [TIGR00232] transketolase, bacterial and yeast |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.00000542021 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCATCTC GCAAAGAACT CGCAAACGCT ATCCGCGCAT TAACTATGGA TGCCGTTCAG
AAAGCCAAAT CTGGTCACCC AGGTGCACCA ATGGGGATGG CGGATATTGC TGAAGTGCTA
TGGAATGATT TCCTTAAGCA CAACCCAAAC AACCCTGAAT GGGTTGATCG CGACCGTTTC
ATTCTATCAA ACGGCCACGG CTCAATGCTT ATCTACTCTT TGCTTCACCT TACGGGTTAT
GCATTGCCAA TCGAAGAGCT GCAAAACTTC CGTCAACTTC ACTCTAAAAC GCCTGGTCAC
CCGGAATATG GTTACACACC GGGTGTTGAA ACGACGACAG GTCCATTAGG CGCCGGTATC
AGTAACGCTG TAGGTATGGC TATTGCTGAG AAGACATTGG CTGCTCAGTT TAACCGCCCG
GGTCACGACA TCGTCGATCA CTTCACCTAT TGCTTCCTTG GCGATGGCTG TTTGATGGAA
GGTATCTCCC ACGAAGCCTG TTCACTGGCC GGCACTTTAG GTCTGGGTAA GCTGGTCGCA
TTTTGGGATG ACAACGGTAT CTCTATCGAC GGACACGTCG AAGGTTGGTT CACCGATGAC
ACGCCTAAGC GTTTCGAATC ATATGGCTGG CATGTGATTG CTAACGTCGA TGGCCACGAT
AGTGATGCTA TCCGCGCGGC GATCGAAGAA GCTAAATCTG TTACCGATAA GCCAACAATG
ATCTGCTGTA AGACAACAAT TGGTTTTGGT TCACCAAACA AGTCTGGTAG CCACGATTGT
CACGGCGCAC CATTAGGCGA TGCTGAAATC CAAGCGACTC GTGAGTTCCT TGGCTGGGAG
CATGGCGCAT TTGAAATCCC TGAAAATGTT TATACGGGTT GGGATGCAAA AGATATTGGC
GCGACCAGAG AGTCTGCGTG GAATGAAAAG CTAGCCTCAT ATAAGGCTGA ATTCCCTGAA
TTGGCCAGTG AATATGAACG TCGTGTTATT ACCGGCGAGC TCCCTGCTGA TTTCGAAACG
AAGGCACAAG CTTTCATTCA AGAGTGTCAG GATAAAGCGG AAGGCATTGC CAGCCGCAAA
GCATCACAAA ATGCTATCGC AACATTCGGA GCTATCTTAC CTGAAATGTT AGGCGGATCG
GCTGACCTGG CAGGGTCTAA CCTGACACTT TGGTCTGGTT CTAAAGGTAT TCAAGATGAC
GCCGCGGGTA ACTACATCTA TTACGGTGTA CGTGAATTCG GTATGAGCGG CATCATGAAT
GGTGTATCAC TGCACGGTGG TTTCATCAAC TTCGGTGCGA CCTTCATGAT GTTTATGGAA
TACGCTCGTA ACGCGGTACG TATGTCTGCG CTGATGGGCA TTCAAAACAT CTTCGTCTAT
ACCCATGATT CAATTGGTCA GGGGGAAGAT GGTCCTACTC ATCAGCCTGT AGAACAATTG
GCTAACCTGC GTATGACTCC GAATATGACT GTGTGGCGTC CATGTGATGC TGCTGAAACG
GCTGTATCAT GGAAGAACGC TATTGAACGT CGCGAGGCGC CAACATCATT GATCTTCAGC
CGTCAAGGCC TGAAGGCTCA ACCACGTAGC GCTCAGCAGT TAGCGGATGT GGCGAAAGGT
GGCTATGTCT TAGTCGATTG CGCCGGTACT CCGGATCTGA TCCTTATCGC TACAGGCTCT
GAAGTACAGT TAGCTATCGA TTCAGCTGCA GTGCTTACAG AACAGGGTCA GAAGGTACGT
GTAGTGTCTA TGCCGTCAAC TAACGAGTTT GATAAGCAAG ATGCGGCATA TAAAGAGTCA
GTACTGCCAA GCACTGTGAC TAAGCGTGTT GCTATCGAAG CGGCTCACGT CGATTTCTGG
CATAAGTACG TTGGATTCGG TGGCGCTGTG GTTGGTATGA CTACGTTCGG TGAGTCGGCT
CCGGGTGGAG AGTTGATGAA GCACTTTGGC TTTACTGTCG AGAATGTAGT TGAAACGGCT
AAAGGACTCT AA
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| Protein sequence | MSSRKELANA IRALTMDAVQ KAKSGHPGAP MGMADIAEVL WNDFLKHNPN NPEWVDRDRF
ILSNGHGSML IYSLLHLTGY ALPIEELQNF RQLHSKTPGH PEYGYTPGVE TTTGPLGAGI
SNAVGMAIAE KTLAAQFNRP GHDIVDHFTY CFLGDGCLME GISHEACSLA GTLGLGKLVA
FWDDNGISID GHVEGWFTDD TPKRFESYGW HVIANVDGHD SDAIRAAIEE AKSVTDKPTM
ICCKTTIGFG SPNKSGSHDC HGAPLGDAEI QATREFLGWE HGAFEIPENV YTGWDAKDIG
ATRESAWNEK LASYKAEFPE LASEYERRVI TGELPADFET KAQAFIQECQ DKAEGIASRK
ASQNAIATFG AILPEMLGGS ADLAGSNLTL WSGSKGIQDD AAGNYIYYGV REFGMSGIMN
GVSLHGGFIN FGATFMMFME YARNAVRMSA LMGIQNIFVY THDSIGQGED GPTHQPVEQL
ANLRMTPNMT VWRPCDAAET AVSWKNAIER REAPTSLIFS RQGLKAQPRS AQQLADVAKG
GYVLVDCAGT PDLILIATGS EVQLAIDSAA VLTEQGQKVR VVSMPSTNEF DKQDAAYKES
VLPSTVTKRV AIEAAHVDFW HKYVGFGGAV VGMTTFGESA PGGELMKHFG FTVENVVETA
KGL
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