| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0873 |
|---|
| Symbol | |
|---|
| ID | 5611447 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | - |
|---|
| Start bp | 1038223 |
|---|
| End bp | 1039374 |
|---|
| Gene Length | 1152 bp |
|---|
| Protein Length | 383 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 640931721 |
|---|
| Product | S-adenosylmethionine synthetase |
|---|
| Protein accession | YP_001472612 |
|---|
| Protein GI | 157374012 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0192] S-adenosylmethionine synthetase |
|---|
| TIGRFAM ID | [TIGR01034] S-adenosylmethionine synthetase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCAAAGC ACCTGTTTAC CTCTGAGTCG GTCTCAGAAG GTCATCCTGA TAAAATCGCC
GATCAGATTT CTGATGCGGT ACTAGACGCA ATCCTAGAGC AAGATCCAAA GGCTCGTGTT
GCGTGTGAAA CATACGTAAA GACCGGCATG GTCATGGTTG GTGGTGAAGT CACTACTTCA
GCCTGGGTTG ATATCGAAGA GATCACCCGT AAGACGGTTC GCGAAATTGG CTACACTCAC
TCAGACATGG GCTTCGATGC CGATTCTTGT GCTGTATTAA ATGCCATTGG TAAGCAATCG
CCTGACATCA ACCAAGGTGT TGATCGCGCA GATCCTAAAG AACAAGGTGC CGGTGACCAG
GGTCTAATGT TTGGTTATGC CAACAATGAG ACTGAGCTGC TAATGCCTGC CCCTATCACC
TATGCTCACG CATTGGTTAA ACGTCAGTCT GAAGTTCGTA AAGCTAAGAC ACTGCCTTGG
TTGCGCCCCG ATGCAAAAAG CCAGGTAACG TTTGCCTACG AAGACCACAA GATTGTTGGC
ATCGACGCTA TCGTACTGTC GACTCAACAT TGTGACAGTG TTAGCCAAGC CGATCTGATC
GAAGGCGTGA TGGAAACTAT CATCAAGCCA GTTCTTCCGG CGCAATGGTT GAACAAAGAT
ACTAAGTACT TTATCAACCC TACCGGTCGT TTCGTTATCG GCGGTCCTAT GGGTGATTGT
GGTCTTACGG GTCGTAAGAT TATCGTTGAT ACCTACGGCG GCATGGCTCG TCACGGTGGC
GGCGCATTCT CTGGTAAAGA TCCTTCTAAA GTTGACCGTA GTGCCGCGTA CGCAGCCCGT
TATGTAGCGA AGAACATCGT TGCTGCCGGC CTTGCCGATC GTTGTGAACT ACAGGTCTCT
TACGCTATCG GCGTAGCTGA GCCGACTTCT ATCAGTATCG AAACATTCGG TACCGGCAAA
GTTTCTGAAG AGGCGCTAAT CGCTCTCGTT CGTCAGCATT TCGACCTGCG CCCTTATGGC
CTGACTGAGA TGTTAGATTT GGCTCGTCCT ATCTACCAGT CAACGGCAGC ATACGGTCAC
TTCGGTCGCA ATGAGTTCCC GTGGGAACGC ACCGATAAAG CCGAAGCCCT TAGAGCCGAT
GCTAAGCTCT AA
|
|---|
| Protein sequence | MAKHLFTSES VSEGHPDKIA DQISDAVLDA ILEQDPKARV ACETYVKTGM VMVGGEVTTS
AWVDIEEITR KTVREIGYTH SDMGFDADSC AVLNAIGKQS PDINQGVDRA DPKEQGAGDQ
GLMFGYANNE TELLMPAPIT YAHALVKRQS EVRKAKTLPW LRPDAKSQVT FAYEDHKIVG
IDAIVLSTQH CDSVSQADLI EGVMETIIKP VLPAQWLNKD TKYFINPTGR FVIGGPMGDC
GLTGRKIIVD TYGGMARHGG GAFSGKDPSK VDRSAAYAAR YVAKNIVAAG LADRCELQVS
YAIGVAEPTS ISIETFGTGK VSEEALIALV RQHFDLRPYG LTEMLDLARP IYQSTAAYGH
FGRNEFPWER TDKAEALRAD AKL
|
|---|
| |