| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0857 |
|---|
| Symbol | |
|---|
| ID | 5613419 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | - |
|---|
| Start bp | 1021299 |
|---|
| End bp | 1021868 |
|---|
| Gene Length | 570 bp |
|---|
| Protein Length | 189 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 640931705 |
|---|
| Product | NTPase |
|---|
| Protein accession | YP_001472596 |
|---|
| Protein GI | 157373996 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG1986] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | [TIGR00258] inosine/xanthosine triphosphatase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 49 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAAGAGA TCGCCAATCT GAAGAAAATA AGGGTGCTGA TTGGTTCGAC CAATCCGGTA
AAGATCAATG CTGCCAAAGT GGCCATTTGT CAGATCTTTC CGGAAACACA TATTGAGTGC
ATAGGTATTC ACGCTCCCTC CATGGTTCCC GACCAGCCAA TGACCGAAGT GGAAACCCGA
CAGGGTGCAA TCAACCGAGT CACCTACTGC CAATCATTAG TCAATTCAAA CGTTCACTCA
GCAGAGCTGT TTGTTGCGAT GGAAGGTGGA GTCGATAACT TTGAACATGG CCCGGCAACG
TTTGCCTATA TTGTTGTTGC CACAGCCAAT CAAGTTTCCG TCGGTCGCAG CGCACTCTTG
CCACTCCCCT CATGCATCTA CCGCTCATTA GCCGCAGGTG AAGAACTTGG CGATGTCATG
GATAGACTAT TTAATACCAA AAATATTAAG CAACAAGGTG GGGCTATAGG ACTATTGACT
AAAGGGCACG CAACCCGTGA AAGTATCTAT ACTCAGGCAC TCATCCTTGC CATGGCTCCA
CTATTAAACC CTGAGCTATA TCAAGACTAA
|
|---|
| Protein sequence | MQEIANLKKI RVLIGSTNPV KINAAKVAIC QIFPETHIEC IGIHAPSMVP DQPMTEVETR
QGAINRVTYC QSLVNSNVHS AELFVAMEGG VDNFEHGPAT FAYIVVATAN QVSVGRSALL
PLPSCIYRSL AAGEELGDVM DRLFNTKNIK QQGGAIGLLT KGHATRESIY TQALILAMAP
LLNPELYQD
|
|---|
| |