Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_0856 |
Symbol | |
ID | 5613418 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 1020048 |
End bp | 1021106 |
Gene Length | 1059 bp |
Protein Length | 352 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 640931704 |
Product | MarR family transcriptional regulator |
Protein accession | YP_001472595 |
Protein GI | 157373995 |
COG category | [K] Transcription |
COG ID | [COG1846] Transcriptional regulators |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 28 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 51 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTTAGTCG CAACTAATCA AGAGGGTTGG GTAGCAGTGT TGAATAGCAA AAGTGATATT TTTAGCAAAG ACAAGGCTGA GCAGGTACAG GGCTCTGGCC TTAGAACACT ATCGAGACAC TTAGTCAGGC AATTAGGCAT GCTCAATTCG GCGTGTGGCG ATCTGCCACT CTCTCCGGTT CAAGCCCACG CGTTGATCGA GCTCAGGCAT CAGGCAATTC CAATAAAACA ACTCGCCCAA ACACTCAACA TAGATAAGTC TAATGCCAGT AGAGCCATCA CAAACTTGGT GGAAAAAGGG CTTGCGCAAA CTAAGAGCAA CCCCAAAGAC AGCAGAAGTT TACTCGCCCA CCTGACCCCC CAGGGGAAAA AGTTGCTTCA CAAGCTGGAT CTGCAGCAAA ACATTGTGTT CGAACAGATC CTGTCGCAAC TTTCAACCGA AGAGACAAAA CAGATAGAGA GTGCAATAAC CCTATATCAC AAAGCGATTT GCCGCTCTCA AGCTCAACAG GGATTGACCA TCCGCGAGAT AAAGCCAAAA GATGATGAAG CTATGGCTCA GATCATTCGC GAAGTATCTG CCGAATATGG TCTCACTGCT GACAAAGGCT ATGGTGTATC AGATCCCACT CTGGACTCCC TCAGCCAGGA GTATCGAGCC GAAAATGCCT GCTACTGGGT GATAGAGGAG GATGGTGTAT TACTGGGCGG CGGGGGGATT GCACCACTAA ACGCTAAAGC GAACCCTGTT GAAAGTGATG GTATTAAATC AGAGCCTGAG TCAAAGAGCG CTTTCGAAGA TGGAGTTTGC GAGCTTCAGA AGATGTATTT TTCACACCAA CTTCGCGGTA AGGGGTTAGC GAGACGCCTC GCCTATCAGG CGATCGACTT CGCTCGTGAA CGCGGTTATC ACTCCTGTTA CTTAGAGACC ACTGCTTGCC TAAATGAAGC CGTTAAGCTG TATGAATCAA TTGGCTTCGA ACATCTGCAG TCTCACCTAG GCAATACCGG CCATGACGCC TGTGAAATGC CGATGTTATT GAAGTTAACG AAAAACTGA
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Protein sequence | MLVATNQEGW VAVLNSKSDI FSKDKAEQVQ GSGLRTLSRH LVRQLGMLNS ACGDLPLSPV QAHALIELRH QAIPIKQLAQ TLNIDKSNAS RAITNLVEKG LAQTKSNPKD SRSLLAHLTP QGKKLLHKLD LQQNIVFEQI LSQLSTEETK QIESAITLYH KAICRSQAQQ GLTIREIKPK DDEAMAQIIR EVSAEYGLTA DKGYGVSDPT LDSLSQEYRA ENACYWVIEE DGVLLGGGGI APLNAKANPV ESDGIKSEPE SKSAFEDGVC ELQKMYFSHQ LRGKGLARRL AYQAIDFARE RGYHSCYLET TACLNEAVKL YESIGFEHLQ SHLGNTGHDA CEMPMLLKLT KN
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