Gene Ssed_0856 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_0856 
Symbol 
ID5613418 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp1020048 
End bp1021106 
Gene Length1059 bp 
Protein Length352 aa 
Translation table11 
GC content48% 
IMG OID640931704 
ProductMarR family transcriptional regulator 
Protein accessionYP_001472595 
Protein GI157373995 
COG category[K] Transcription 
COG ID[COG1846] Transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones51 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTTAGTCG CAACTAATCA AGAGGGTTGG GTAGCAGTGT TGAATAGCAA AAGTGATATT 
TTTAGCAAAG ACAAGGCTGA GCAGGTACAG GGCTCTGGCC TTAGAACACT ATCGAGACAC
TTAGTCAGGC AATTAGGCAT GCTCAATTCG GCGTGTGGCG ATCTGCCACT CTCTCCGGTT
CAAGCCCACG CGTTGATCGA GCTCAGGCAT CAGGCAATTC CAATAAAACA ACTCGCCCAA
ACACTCAACA TAGATAAGTC TAATGCCAGT AGAGCCATCA CAAACTTGGT GGAAAAAGGG
CTTGCGCAAA CTAAGAGCAA CCCCAAAGAC AGCAGAAGTT TACTCGCCCA CCTGACCCCC
CAGGGGAAAA AGTTGCTTCA CAAGCTGGAT CTGCAGCAAA ACATTGTGTT CGAACAGATC
CTGTCGCAAC TTTCAACCGA AGAGACAAAA CAGATAGAGA GTGCAATAAC CCTATATCAC
AAAGCGATTT GCCGCTCTCA AGCTCAACAG GGATTGACCA TCCGCGAGAT AAAGCCAAAA
GATGATGAAG CTATGGCTCA GATCATTCGC GAAGTATCTG CCGAATATGG TCTCACTGCT
GACAAAGGCT ATGGTGTATC AGATCCCACT CTGGACTCCC TCAGCCAGGA GTATCGAGCC
GAAAATGCCT GCTACTGGGT GATAGAGGAG GATGGTGTAT TACTGGGCGG CGGGGGGATT
GCACCACTAA ACGCTAAAGC GAACCCTGTT GAAAGTGATG GTATTAAATC AGAGCCTGAG
TCAAAGAGCG CTTTCGAAGA TGGAGTTTGC GAGCTTCAGA AGATGTATTT TTCACACCAA
CTTCGCGGTA AGGGGTTAGC GAGACGCCTC GCCTATCAGG CGATCGACTT CGCTCGTGAA
CGCGGTTATC ACTCCTGTTA CTTAGAGACC ACTGCTTGCC TAAATGAAGC CGTTAAGCTG
TATGAATCAA TTGGCTTCGA ACATCTGCAG TCTCACCTAG GCAATACCGG CCATGACGCC
TGTGAAATGC CGATGTTATT GAAGTTAACG AAAAACTGA
 
Protein sequence
MLVATNQEGW VAVLNSKSDI FSKDKAEQVQ GSGLRTLSRH LVRQLGMLNS ACGDLPLSPV 
QAHALIELRH QAIPIKQLAQ TLNIDKSNAS RAITNLVEKG LAQTKSNPKD SRSLLAHLTP
QGKKLLHKLD LQQNIVFEQI LSQLSTEETK QIESAITLYH KAICRSQAQQ GLTIREIKPK
DDEAMAQIIR EVSAEYGLTA DKGYGVSDPT LDSLSQEYRA ENACYWVIEE DGVLLGGGGI
APLNAKANPV ESDGIKSEPE SKSAFEDGVC ELQKMYFSHQ LRGKGLARRL AYQAIDFARE
RGYHSCYLET TACLNEAVKL YESIGFEHLQ SHLGNTGHDA CEMPMLLKLT KN