Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_0851 |
Symbol | |
ID | 5613286 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 1014679 |
End bp | 1016313 |
Gene Length | 1635 bp |
Protein Length | 544 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 640931699 |
Product | hypothetical protein |
Protein accession | YP_001472590 |
Protein GI | 157373990 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3063] Tfp pilus assembly protein PilF |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 26 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 54 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGACACTAA AAACTATTCA TTCACTTCTT TTATCATGCT TTTTGTTAGG GCTCTATCTA CCTTCAGCAC TCGCTCAAGT TTATAAATGG GTGGACGAAG ATGGTGTCGT ACATTTTAGT GATAAGCCGC CAGTCGAGCA GCCTAAAGAA ACAGACTCTC CCTCAAATCA ATCAAAACAT ATATCCGAAA GCAGAGCCGC AGAGCGGTTA GTGTCTAAGT CTACTCGTTG GTTTCAAAGT ATGAGCCAAT CTCAGGGGAT CACCTTAACG ATTAGACAGT TGCTGCGTCA GCGTAAGTAT GAATATCTTA ATATTGTGCT GGAAGATCTG CAGTCAGCTA GCGAATTAAG CTATGACAAG GAACTAGAGC TCTTTACCGC TTATAAAGCC TTCAGGTTGG ATAGCAATGC TTACATTAGC TTATTGGATG AATGGATAAC TTATGACCCC AGTCAATATT ATGGGTACTT AGCCAAGGCC GAATATTTTT ACGGCGCGGC TTGGCGTGCC AGAGGCACTA AGGCAATTAA AGATACCAGT GCAGATCAGC TTACAAATAT GAAAGAGGTG ATGTTAGAAG CTAAAGAACA GCTAGAACTG GTGCAGAATC TTTTCGCTGA CTCCATGGTG AGCTATGGGT TACAGATTGC CATGGCCAAT AGTTTAGGCG ATGAATCTGA AGTTGCCATC ATCGCTAAAA AAGCACTTGA GATAAAACCC GCATCATATT ATGTCCGAGC AATCTATTTG CGAACGCTTA CCCCCAGATG GGGGGGCTCA TTTGAGAAGA TGGAGCTGTT TTTTAAAGAG AGCTCTGAAT TCATCAGAGA CAATCCAAAG TTGACTCAAC TACAAGGTCT CATCTTTCTG GAAGCTGGTC AGCTAGCTTC TTTGCAGAAA CGTTATGATC AAGCTGAGAG TATTTTTGAT CGTGCACTGC TTTACGGAGA TAACGATGAA GTGCTGGCAA ATCGTGGAAA GAGTCGGTAT AGGCAAGGGA AGTATCAAGA AGCTTTAGAT GATCTAAACC GTGCTATTGG TATGAGTCGA GAGTACGGAG AGTATTACCA TTGGCGCGGA AAAATCTATA GCGCAATGAA ACAATATAGT AACTCCTTGA GTGACTTTGA GCGTGCCGCT CAACTTATGC CAAATGATAA AGATCTTAAG CAGCACCGTC AGCGAATAGA AACCTTACTA GCTAAACAGA GTGAGGGTAA AGCGGTGGCA TTCAAGCGTA GTAAGGCATT AGACCAACTT GATGATGCAA TAAAAAAAGA GCCAAGCAAT GCTTTGCATT ATTACAGTCG ATCACTCGCT TACATAGAGT TAAAGCAATA TGACTCAGCA GTGGAAGATC TGAAGAAAGC GATAACGCAT AACCCTCATG AATACCAATA TTACCTTTCC ATGGATTGGC TGCTAATTAA GAGGAGGGAT TGGAAACAAA TAATCTATTA CTGGGATATC TACCTCAATT TATACCCAAA AGATCATCAA GCCTACCTTG AGCGCAGTGG AGCATACTTT CATCAAGGTA ATATTCAGGC TGCAGCCAGA GATGCAAAAA TGTCTGCAAA GCTTGGTAAT AAGGAAGCAC TGGCTTTCTA TGAAGAGTTA AAACAGAAGT TATAA
|
Protein sequence | MTLKTIHSLL LSCFLLGLYL PSALAQVYKW VDEDGVVHFS DKPPVEQPKE TDSPSNQSKH ISESRAAERL VSKSTRWFQS MSQSQGITLT IRQLLRQRKY EYLNIVLEDL QSASELSYDK ELELFTAYKA FRLDSNAYIS LLDEWITYDP SQYYGYLAKA EYFYGAAWRA RGTKAIKDTS ADQLTNMKEV MLEAKEQLEL VQNLFADSMV SYGLQIAMAN SLGDESEVAI IAKKALEIKP ASYYVRAIYL RTLTPRWGGS FEKMELFFKE SSEFIRDNPK LTQLQGLIFL EAGQLASLQK RYDQAESIFD RALLYGDNDE VLANRGKSRY RQGKYQEALD DLNRAIGMSR EYGEYYHWRG KIYSAMKQYS NSLSDFERAA QLMPNDKDLK QHRQRIETLL AKQSEGKAVA FKRSKALDQL DDAIKKEPSN ALHYYSRSLA YIELKQYDSA VEDLKKAITH NPHEYQYYLS MDWLLIKRRD WKQIIYYWDI YLNLYPKDHQ AYLERSGAYF HQGNIQAAAR DAKMSAKLGN KEALAFYEEL KQKL
|
| |