Gene Ssed_0851 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_0851 
Symbol 
ID5613286 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp1014679 
End bp1016313 
Gene Length1635 bp 
Protein Length544 aa 
Translation table11 
GC content42% 
IMG OID640931699 
Producthypothetical protein 
Protein accessionYP_001472590 
Protein GI157373990 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG3063] Tfp pilus assembly protein PilF 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones54 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACACTAA AAACTATTCA TTCACTTCTT TTATCATGCT TTTTGTTAGG GCTCTATCTA 
CCTTCAGCAC TCGCTCAAGT TTATAAATGG GTGGACGAAG ATGGTGTCGT ACATTTTAGT
GATAAGCCGC CAGTCGAGCA GCCTAAAGAA ACAGACTCTC CCTCAAATCA ATCAAAACAT
ATATCCGAAA GCAGAGCCGC AGAGCGGTTA GTGTCTAAGT CTACTCGTTG GTTTCAAAGT
ATGAGCCAAT CTCAGGGGAT CACCTTAACG ATTAGACAGT TGCTGCGTCA GCGTAAGTAT
GAATATCTTA ATATTGTGCT GGAAGATCTG CAGTCAGCTA GCGAATTAAG CTATGACAAG
GAACTAGAGC TCTTTACCGC TTATAAAGCC TTCAGGTTGG ATAGCAATGC TTACATTAGC
TTATTGGATG AATGGATAAC TTATGACCCC AGTCAATATT ATGGGTACTT AGCCAAGGCC
GAATATTTTT ACGGCGCGGC TTGGCGTGCC AGAGGCACTA AGGCAATTAA AGATACCAGT
GCAGATCAGC TTACAAATAT GAAAGAGGTG ATGTTAGAAG CTAAAGAACA GCTAGAACTG
GTGCAGAATC TTTTCGCTGA CTCCATGGTG AGCTATGGGT TACAGATTGC CATGGCCAAT
AGTTTAGGCG ATGAATCTGA AGTTGCCATC ATCGCTAAAA AAGCACTTGA GATAAAACCC
GCATCATATT ATGTCCGAGC AATCTATTTG CGAACGCTTA CCCCCAGATG GGGGGGCTCA
TTTGAGAAGA TGGAGCTGTT TTTTAAAGAG AGCTCTGAAT TCATCAGAGA CAATCCAAAG
TTGACTCAAC TACAAGGTCT CATCTTTCTG GAAGCTGGTC AGCTAGCTTC TTTGCAGAAA
CGTTATGATC AAGCTGAGAG TATTTTTGAT CGTGCACTGC TTTACGGAGA TAACGATGAA
GTGCTGGCAA ATCGTGGAAA GAGTCGGTAT AGGCAAGGGA AGTATCAAGA AGCTTTAGAT
GATCTAAACC GTGCTATTGG TATGAGTCGA GAGTACGGAG AGTATTACCA TTGGCGCGGA
AAAATCTATA GCGCAATGAA ACAATATAGT AACTCCTTGA GTGACTTTGA GCGTGCCGCT
CAACTTATGC CAAATGATAA AGATCTTAAG CAGCACCGTC AGCGAATAGA AACCTTACTA
GCTAAACAGA GTGAGGGTAA AGCGGTGGCA TTCAAGCGTA GTAAGGCATT AGACCAACTT
GATGATGCAA TAAAAAAAGA GCCAAGCAAT GCTTTGCATT ATTACAGTCG ATCACTCGCT
TACATAGAGT TAAAGCAATA TGACTCAGCA GTGGAAGATC TGAAGAAAGC GATAACGCAT
AACCCTCATG AATACCAATA TTACCTTTCC ATGGATTGGC TGCTAATTAA GAGGAGGGAT
TGGAAACAAA TAATCTATTA CTGGGATATC TACCTCAATT TATACCCAAA AGATCATCAA
GCCTACCTTG AGCGCAGTGG AGCATACTTT CATCAAGGTA ATATTCAGGC TGCAGCCAGA
GATGCAAAAA TGTCTGCAAA GCTTGGTAAT AAGGAAGCAC TGGCTTTCTA TGAAGAGTTA
AAACAGAAGT TATAA
 
Protein sequence
MTLKTIHSLL LSCFLLGLYL PSALAQVYKW VDEDGVVHFS DKPPVEQPKE TDSPSNQSKH 
ISESRAAERL VSKSTRWFQS MSQSQGITLT IRQLLRQRKY EYLNIVLEDL QSASELSYDK
ELELFTAYKA FRLDSNAYIS LLDEWITYDP SQYYGYLAKA EYFYGAAWRA RGTKAIKDTS
ADQLTNMKEV MLEAKEQLEL VQNLFADSMV SYGLQIAMAN SLGDESEVAI IAKKALEIKP
ASYYVRAIYL RTLTPRWGGS FEKMELFFKE SSEFIRDNPK LTQLQGLIFL EAGQLASLQK
RYDQAESIFD RALLYGDNDE VLANRGKSRY RQGKYQEALD DLNRAIGMSR EYGEYYHWRG
KIYSAMKQYS NSLSDFERAA QLMPNDKDLK QHRQRIETLL AKQSEGKAVA FKRSKALDQL
DDAIKKEPSN ALHYYSRSLA YIELKQYDSA VEDLKKAITH NPHEYQYYLS MDWLLIKRRD
WKQIIYYWDI YLNLYPKDHQ AYLERSGAYF HQGNIQAAAR DAKMSAKLGN KEALAFYEEL
KQKL