| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0847 |
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| Symbol | |
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| ID | 5613201 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1009951 |
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| End bp | 1011867 |
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| Gene Length | 1917 bp |
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| Protein Length | 638 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640931695 |
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| Product | peptidase U32 |
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| Protein accession | YP_001472586 |
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| Protein GI | 157373986 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0826] Collagenase and related proteases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 55 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCAAAG CTGCCATCTT TACCCCCGAT GATATCTCGC ATATATCGAA CCGATTAGAA
CTGCTTGCCC CGGCTAAAAA TGCCGAATTT GGTATGGAAG CGATTCTTCA TGGTGCCGAT
GCGGTCTATA TCGGTGGCCC TGATTTTGGC GCTCGTGCAA CGGCGGGCAA TAGCGTGGAA
GATATCGCCA GGCTGTGCAG TTTTGCCCAT AAATACCATG CTCAGGTGTT TGTCGCCCTC
AATACCATCT TGATGGATGA TGAGCTGGCC GATGCTGAAA AGTTGATCTG GCAGCTCTAT
GAAGCCGGCG CCGATGCCCT CATCGTACAG GATATGGGGG TACTGCAGCT CGACCTTCCT
CCTATCGCGT TGCATGCCAG CACCCAGATG GATAACCGCA CCGCCGAAAA AGCGGTTTTT
CTTGAGCAGG TTGGTTTCTC TCAGGTCGTA CTGGCTCGCG AACTGGGGCT GAGTCAGATA
CGCGAAGTGG CCGCTCATAC CAAGATGCAA CTCGAGTTCT TCATTCATGG AGCCCTGTGT
GTGGCTTACA GTGGTCTGTG TAACTTAAGT CATGCATTCA GTAATCGCAG CGCTAACCGA
GGTGAATGCT CACAGATGTG TCGTCTTCCG GGCGAGCTTA AGACCCGTCA GGGCGAGGTA
CTTGCCGAAA ATGAGCATCT GCTATCGCTA AAGGATAATA ATCAGACCGA TAACCTTGAA
GCCTTGATCG ATGCCGGTGT GCGCTCATTT AAAATTGAAG GCCGACTCAA AGATATCAAC
TATGTGAAAA ACGTGACCGC CCATTACAGG CAGGAGTTGG ACAAGATCAT CGCCCGACGT
CCGGAATTGA AAGCCTCATC ACATGGGCGC AGCGTGCATA ACTTCACTCC AAATCCGGAG
AAGACCTTTA ACCGTGGACG AACGGATTAC TTTGTTCATG AGCGCAGTCA GGGGGTCAGT
GATTTTCGCT CACCAAAATA TATCGGTGAA GAGGTCGCCA CCGTTAAGGC CTTAGGCAAA
GATTACATCG AGGTTAACTC TACCCATAGT TTTAATAATG GTGATGGCTT ATGTTACTTC
CCCGCCAACT ATGCCAGTGC CAAGCAGTCC GATGATAAGC TGAGAGGGTT ACGACTCAAT
CGCGCCGAAG GTAATAAACT GCATGTATTG GCTGTGCCAG GCGATCTTGA AGTGGGTATG
ACTATCTATC GTAACCGAGA TCAGGCTTTC GAGGCGGTGT TAGCCAAAGA GTCATCGAAG
CGCTCTATCG AAGTCGATAT TAAGCTGACA GACACCGCAG ATGGCATCAT GCTGACAATG
ACAGATATCT ATGGTCATCA GGGCGTGGTG ACTCTGGCTT TAGATAAACA GGCTGCCAAT
GAACCAGAAA GCGCTGGAGC AAAGCTACGT AAACAGTTAG GAAAACTTGG CAGTACCGAT
TTTGTTGCCC GTGAGATCAC TGTCGAGACT GAGCAAGTTT GGTTTGCGCC TGCCTCGGTG
ATTAACGGAC TTCGCCGTGA TGCGGTAGCG GCGCTCGAGC AAGCACGAGT CGATGAGTAT
CAAAGGCCAC AGCCTTGGAA GCATAATCAA AACGCCATGT ATCCGACCAA GCACCTTAGT
TACCTGGCTA ATGTGGCCAA TCAAAAATCG AAAGATTTCT ATCAGCAGCA TGGTGTGATT
GAGATTGAGG ATACCTATGA GAAGAACGGT ATCACCGAAG AGGTCCCATT GATGGTGACT
AAACACTGCT TGCGCTTCAA CTTCAACCTC TGTCCAAAAG AGGTGCCTGG CATAAAGGCT
GATCCTATGG TACTTGAGAT AGGTAAAGAT GTATTAAAGC TGGTTTTCGA CTGCCCTAAG
TGTGAAATGA TGGTGGTCGG CGCCAATCGC CAGGTGAAGA GCGACGGCAG AGGCTAG
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| Protein sequence | MSKAAIFTPD DISHISNRLE LLAPAKNAEF GMEAILHGAD AVYIGGPDFG ARATAGNSVE
DIARLCSFAH KYHAQVFVAL NTILMDDELA DAEKLIWQLY EAGADALIVQ DMGVLQLDLP
PIALHASTQM DNRTAEKAVF LEQVGFSQVV LARELGLSQI REVAAHTKMQ LEFFIHGALC
VAYSGLCNLS HAFSNRSANR GECSQMCRLP GELKTRQGEV LAENEHLLSL KDNNQTDNLE
ALIDAGVRSF KIEGRLKDIN YVKNVTAHYR QELDKIIARR PELKASSHGR SVHNFTPNPE
KTFNRGRTDY FVHERSQGVS DFRSPKYIGE EVATVKALGK DYIEVNSTHS FNNGDGLCYF
PANYASAKQS DDKLRGLRLN RAEGNKLHVL AVPGDLEVGM TIYRNRDQAF EAVLAKESSK
RSIEVDIKLT DTADGIMLTM TDIYGHQGVV TLALDKQAAN EPESAGAKLR KQLGKLGSTD
FVAREITVET EQVWFAPASV INGLRRDAVA ALEQARVDEY QRPQPWKHNQ NAMYPTKHLS
YLANVANQKS KDFYQQHGVI EIEDTYEKNG ITEEVPLMVT KHCLRFNFNL CPKEVPGIKA
DPMVLEIGKD VLKLVFDCPK CEMMVVGANR QVKSDGRG
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