| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0843 |
|---|
| Symbol | |
|---|
| ID | 5613106 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | - |
|---|
| Start bp | 1005697 |
|---|
| End bp | 1006353 |
|---|
| Gene Length | 657 bp |
|---|
| Protein Length | 218 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 640931691 |
|---|
| Product | RNA pseudouridine synthase family protein |
|---|
| Protein accession | YP_001472582 |
|---|
| Protein GI | 157373982 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
|---|
| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.626046 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 58 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCTGAAA ATAAACCGCT ACCAACGAAT AACGATACCT CTTATGAGTT CAATACTGAG
TGTCTGTCGA TAAGGGATGC TTCTCAACCC CATCACCACT ATAAAATTTT CAAGCCCTAT
GGCTACCTGA GTCAATTTGT ACCGGAAAGA AGAAAGAGTA AAAAACTGCT GGCAGAACTA
GCCCTATTCC CAGCCGGCAC AATGGCAATC GGCAGACTCG ATCATGACTC TGAGGGGCTA
CTGTTATTGA CTACCGATGG CATGGTCAGC CACCAGGTTC GCAGTAAAAA AGTAGAAAAG
GAGTATTATG TGCAGGTTGA TGGCGACATC GATGACGCCG CAATACTGAA GCTACAAACC
GGGGTCGAGA TTGGCATCAA AGGCGAAAAA TATCTCACCC TGCCCTGCAA AGTTTTTAAA
CTGGAGAATG AACCCGAATT ACCGTCTAAT GGACGTAAGC CTCGTGATCC TAAGCATGGG
CCAATGAGCT GGGTATCGAT CACTATAGGC GAAGGAAAAA ACCGTCAGAT AAGAAAAATG
ACGGCGGCGG CTGGTTTTCC AACTCTTAGG TTGGTCAGAG TGAGAATTGG CAATATTCAT
CTCGATAGGA TGCAGTCCGG CGAAGTCATT CTACTGAAAA ACCCTGAGAG TATCTGA
|
|---|
| Protein sequence | MPENKPLPTN NDTSYEFNTE CLSIRDASQP HHHYKIFKPY GYLSQFVPER RKSKKLLAEL
ALFPAGTMAI GRLDHDSEGL LLLTTDGMVS HQVRSKKVEK EYYVQVDGDI DDAAILKLQT
GVEIGIKGEK YLTLPCKVFK LENEPELPSN GRKPRDPKHG PMSWVSITIG EGKNRQIRKM
TAAAGFPTLR LVRVRIGNIH LDRMQSGEVI LLKNPESI
|
|---|
| |