| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0842 |
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| Symbol | |
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| ID | 5613105 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1003204 |
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| End bp | 1005657 |
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| Gene Length | 2454 bp |
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| Protein Length | 817 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640931690 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) |
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| Protein accession | YP_001472581 |
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| Protein GI | 157373981 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 58 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATTGATA TTAACGTTCC TCAAGATACT TGGCTAAAAT GGCAAGCGTC AATTGACCTT
ATTACCCGCA TCTCTCACTG CGTGGGCGTA TTGAGTGTCG TGGATGCAGA GAATCAACTA
TGTGCGAAAA TCAGTGCAGG GCTAAAAGAT GAAGACACCG CCTCTTACGA AGCCATTTCT
CTCAATATTA AGGAAACCAG TGAAAGGGTC TCTATTGCCT TACTATGGCC ATCGAAAGCC
ATCTTTGGTG AGCTCTCTTT CTACTTAATC GAACAAACCG ATAAAGCCGA GGGACCGACG
GATTGTTTAG TACAAACCAA GCAACTTGCA CGGCTTACTG CGGACAATAT AGAACTACAA
CTGGCTGAGC TTTATCGTCA GTATCGTTGC CAAGAATCTC AGGTTAGAGG TCGTGTCTCT
AACGGGGATG TTATCGATCT ACAGCTCTTT ATCGATAGTT TGAAAGAACA TGTTTGGATG
AAAGATATTG AAGGACGTTA CGTCATTTTC AACCGAAGCG TCGAAAAATC ATGGGGGAAA
ACCCGTGAAG AGATCATGAA CAAGACGGAT GAAGAGTTAT TTGTTGCCGA TTTAGCTGAA
GAGTTTATTC AAGCCGATAC GGAAGCCATT AATAAGGGCG AGCAGATCAC GGCTGGTGAG
TGTGAGGGAC AACATGCCGA AATCGATAGA TACTGGTTAG AGACCGCAAA AGTTCCTGTG
GTGACAGATG ATGGTTGCCT TAAGGGGGTC ATAGGACTCT CCAGAAATAT CTCTCAACAT
AAGGCTGTAC AAGAGCAGTT AGAGCTTTCC GGACGGGTAT TTGAAAACTC TGTCGAAGGG
GTGATGATCA CCGACCGGGA TGGCAAGATC ATAGAAACTT ATGGGGCTTT CTCTGAAATT
ACCGGGTATT CGAGGGAGGA GGTGTTAGGT AAAAATCCCA GCATGTTCAG CTCCGGTCGA
CACGATAAAG CCTTCTATGA TGACCTGTGG ACAGGTTTGT TGCACAAGGG GAGATGGCAC
GGTGAGATCT GGAATCGACG CAAGAATGGC GCCATCTTCC CGCAGTTGGT TACCCTTAGC
TCGATGCTTG GTGATGATGG GTTGGTGCGA TATTTCGTTG CCGTGTTTAC AGATATTTCG
GCGCAGAAGA AAAATGAAGA GCAGCTGGCC CACCTTGCTT ACCATGATCC TTTAACCAAC
CTGCCTAACA GGATGACGTT AACTGCCCAG ATTGAGCAGG AGCTCCGTCA TGCTCAGTAT
CAAGGCTCTC AGTTGGCTAT CGTGTTTATC GATGTGGACC TGTTTAAGCA GATCAATGAT
AGTTTCGGTC ATCTTATGGG TGATGAAATC TTGGTGGAGC TGGCCAACAG GTTAACGGCT
CAAAAAGGCG CCGAGGATAC ACTGGCGCGT ATTGGCGGCG ATGAATTTGT CGTGTTGTTT
CCAGGGGGCG GAGGCAGTGA AGAGCTCACT TTAGCCCTGA GTAAGTTAAG GGAAGCGTTC
GAACAGCCTT TTTCTGTCGG GGAGAACGAT CAGGTCAGGT TGACTGCCAG TATGGGCGTC
TCTGTTTACC CCCATGATGG TAAGGATGGT TATACACTGT TAAGAAATGC GGATGCTGCT
AAACACAGGG CTAAGCAGGA CAGTCGTAAC AGTTATGCTT TTTATACCGA GTCGCTGACC
TTAGAGTCAC GAGAGCACCT TAAGCTGCAA AGTGCACTGC ATATGGCTCT GGAGGAGGGG
AACTTCCACC TGGTTTACCA GCCGAAACTT AACTTTAACA GTCTTAAAAC TGTGGGTTTC
GAGGCCTTAC TTAGGTGGCG AGACCCTGTT TTAGGCGATA TTTCTCCTGG GGTATTTATT
CCCATCGCGG AAAAAATAGG TCTGATTAAT GCTATTGGCA GCTGGGTGCT GAGAGCCGCA
TGCCTGCAAG GCGTTAAGTG GATCGAGCAG GGCAAAACAT TTGGTCGTAT TGCGGTGAAT
ATCGCCGGTC AACAGATAAA GCGGAGCTCA TTTGTTGAAG AGGTCAAACA GATCCTGAAT
GAGACAGGCT TTCCTGCTCA GTCGTTGGAG CTTGAGGTTA CCGAGAGCTT TATGATGTCG
GATCCCGAAG TGGCTATTCG TGATCTCAGG GTGTTAGGTG ACTTAGGCAT TGAGCTCTCT
GTCGATGATT TTGGTACCGG CTATTCTTCA CTTAATTACC TGAAAAAACT GCCTATTCAT
AAGTTAAAAA TCGATCAGTC CTTTGTCAGG GATATACCTT CTGACGCTAA TAACACCGCC
ATCGCTAAGG CTGTGATTGC CCTGGGCCAT GCCTTGAATT TACAAGTTAT TGCGGAGGGA
GTTGAAACTG AGGAACAAGC CGATTTCTTA CGTGAAAGCG GCTGTGATGA AGTGCAGGGA
TACCTCTATA GCAGGCCTCA GTTACCCGAA GCGTTGCAGC AATTTTTGTA CTGA
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| Protein sequence | MIDINVPQDT WLKWQASIDL ITRISHCVGV LSVVDAENQL CAKISAGLKD EDTASYEAIS
LNIKETSERV SIALLWPSKA IFGELSFYLI EQTDKAEGPT DCLVQTKQLA RLTADNIELQ
LAELYRQYRC QESQVRGRVS NGDVIDLQLF IDSLKEHVWM KDIEGRYVIF NRSVEKSWGK
TREEIMNKTD EELFVADLAE EFIQADTEAI NKGEQITAGE CEGQHAEIDR YWLETAKVPV
VTDDGCLKGV IGLSRNISQH KAVQEQLELS GRVFENSVEG VMITDRDGKI IETYGAFSEI
TGYSREEVLG KNPSMFSSGR HDKAFYDDLW TGLLHKGRWH GEIWNRRKNG AIFPQLVTLS
SMLGDDGLVR YFVAVFTDIS AQKKNEEQLA HLAYHDPLTN LPNRMTLTAQ IEQELRHAQY
QGSQLAIVFI DVDLFKQIND SFGHLMGDEI LVELANRLTA QKGAEDTLAR IGGDEFVVLF
PGGGGSEELT LALSKLREAF EQPFSVGEND QVRLTASMGV SVYPHDGKDG YTLLRNADAA
KHRAKQDSRN SYAFYTESLT LESREHLKLQ SALHMALEEG NFHLVYQPKL NFNSLKTVGF
EALLRWRDPV LGDISPGVFI PIAEKIGLIN AIGSWVLRAA CLQGVKWIEQ GKTFGRIAVN
IAGQQIKRSS FVEEVKQILN ETGFPAQSLE LEVTESFMMS DPEVAIRDLR VLGDLGIELS
VDDFGTGYSS LNYLKKLPIH KLKIDQSFVR DIPSDANNTA IAKAVIALGH ALNLQVIAEG
VETEEQADFL RESGCDEVQG YLYSRPQLPE ALQQFLY
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